Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 MIR943-201ENST00000401286 94 ntBASIC16.39■□□□□ 0.21
LMX1AQ8TE12 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 KLF2P3-201ENST00000451977 1087 ntBASIC16.39■□□□□ 0.21
LMX1AQ8TE12 AC125807.1-201ENST00000483097 614 ntBASIC16.39■□□□□ 0.21
LMX1AQ8TE12 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 MIR3909-201ENST00000579518 119 ntBASIC16.39■□□□□ 0.21
LMX1AQ8TE12 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 AL390955.2-201ENST00000603032 514 ntBASIC16.39■□□□□ 0.21
LMX1AQ8TE12 AC008267.7-201ENST00000624570 1194 ntBASIC16.39■□□□□ 0.21
LMX1AQ8TE12 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1AQ8TE12 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 RNA5SP421-201ENST00000516864 134 ntBASIC16.38■□□□□ 0.21
LMX1AQ8TE12 AC051619.7-201ENST00000568314 623 ntBASIC16.38■□□□□ 0.21
LMX1AQ8TE12 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.38■□□□□ 0.21
LMX1AQ8TE12 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
LMX1AQ8TE12 CROCCP2-202ENST00000412962 2773 ntBASIC16.38■□□□□ 0.21
LMX1AQ8TE12 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 LINC00896-202ENST00000609602 2128 ntBASIC16.37■□□□□ 0.21
LMX1AQ8TE12 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 SPDYE7P-202ENST00000420373 878 ntBASIC16.37■□□□□ 0.21
LMX1AQ8TE12 AC107890.1-201ENST00000422478 521 ntBASIC16.37■□□□□ 0.21
LMX1AQ8TE12 SPDYE14P-201ENST00000442619 822 ntBASIC16.37■□□□□ 0.21
LMX1AQ8TE12 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 AP000842.3-202ENST00000569238 1080 ntBASIC16.37■□□□□ 0.21
LMX1AQ8TE12 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 MIR6080-201ENST00000617359 66 ntBASIC16.37■□□□□ 0.21
LMX1AQ8TE12 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 AC008677.1-201ENST00000519230 1561 ntBASIC16.37■□□□□ 0.21
LMX1AQ8TE12 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms