Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 UBALD1-205ENST00000590891 2641 ntBASIC15.33■□□□□ 0.04
ATG4DQ86TL0 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.33■□□□□ 0.04
ATG4DQ86TL0 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 AC006538.1-201ENST00000567905 1585 ntBASIC15.32■□□□□ 0.04
ATG4DQ86TL0 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 IGHV3-65-201ENST00000523210 341 ntBASIC15.32■□□□□ 0.04
ATG4DQ86TL0 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 AL356488.2-201ENST00000602755 427 ntBASIC15.32■□□□□ 0.04
ATG4DQ86TL0 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.32■□□□□ 0.04
ATG4DQ86TL0 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 RPS2P28-201ENST00000314255 741 ntBASIC15.31■□□□□ 0.04
ATG4DQ86TL0 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 AC107918.2-201ENST00000530817 355 ntBASIC15.31■□□□□ 0.04
ATG4DQ86TL0 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 AC091167.2-201ENST00000579581 588 ntBASIC15.31■□□□□ 0.04
ATG4DQ86TL0 MIR4492-201ENST00000581627 80 ntBASIC15.31■□□□□ 0.04
ATG4DQ86TL0 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 AP002414.3-201ENST00000589352 1468 ntBASIC15.31■□□□□ 0.04
ATG4DQ86TL0 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4DQ86TL0 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4DQ86TL0 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4DQ86TL0 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4DQ86TL0 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4DQ86TL0 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.3■□□□□ 0.04
ATG4DQ86TL0 MIR574-201ENST00000385209 96 ntBASIC15.3■□□□□ 0.04
ATG4DQ86TL0 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4DQ86TL0 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.3■□□□□ 0.04
ATG4DQ86TL0 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
ATG4DQ86TL0 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.3■□□□□ 0.04
ATG4DQ86TL0 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
ATG4DQ86TL0 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4DQ86TL0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.3■□□□□ 0.04
ATG4DQ86TL0 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.3■□□□□ 0.04
ATG4DQ86TL0 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms