Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 LINC02199-201ENST00000506655 2702 ntBASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 AP002472.1-201ENST00000577490 586 ntBASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC144BQ3MJ40 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 AC025580.3-201ENST00000617932 1424 ntBASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 AC008741.2-201ENST00000612792 3115 ntBASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC144BQ3MJ40 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 MYCLP1-201ENST00000372451 1075 ntBASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 AL645939.2-201ENST00000427340 991 ntBASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 AC074386.1-202ENST00000463561 864 ntBASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 PI4KAP1-204ENST00000612579 1703 ntBASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms