Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 AC006504.4-201ENST00000592118 1568 ntBASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 AC073621.1-201ENST00000392730 636 ntBASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 PTCHD3P3-201ENST00000403073 906 ntBASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 ELK2BP-201ENST00000415014 1224 ntBASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 AC007967.2-201ENST00000432613 625 ntBASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 AC136632.2-201ENST00000512891 861 ntBASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 AC005593.1-201ENST00000624894 515 ntBASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 AC009947.1-201ENST00000444350 727 ntBASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTCHD3Q3KNS1 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PTCHD3Q3KNS1 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 AL021920.2-201ENST00000624828 1351 ntBASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms