Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.57■□□□□ 0.24
SHMT2P34897 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.57■□□□□ 0.24
SHMT2P34897 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHMT2P34897 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
SHMT2P34897 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.57■□□□□ 0.24
SHMT2P34897 CRYGEP-201ENST00000412192 528 ntBASIC16.57■□□□□ 0.24
SHMT2P34897 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.57■□□□□ 0.24
SHMT2P34897 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHMT2P34897 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
SHMT2P34897 KRT18P58-201ENST00000527480 1120 ntBASIC16.57■□□□□ 0.24
SHMT2P34897 AC027601.4-201ENST00000611259 610 ntBASIC16.57■□□□□ 0.24
SHMT2P34897 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHMT2P34897 AL391005.1-201ENST00000623953 2435 ntBASIC16.57■□□□□ 0.24
SHMT2P34897 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.57■□□□□ 0.24
SHMT2P34897 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHMT2P34897 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.56■□□□□ 0.24
SHMT2P34897 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SHMT2P34897 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SHMT2P34897 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.56■□□□□ 0.24
SHMT2P34897 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.56■□□□□ 0.24
SHMT2P34897 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.56■□□□□ 0.24
SHMT2P34897 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SHMT2P34897 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SHMT2P34897 AC087163.2-201ENST00000457299 853 ntBASIC16.56■□□□□ 0.24
SHMT2P34897 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.56■□□□□ 0.24
SHMT2P34897 FAM197Y3-203ENST00000618346 717 ntBASIC16.56■□□□□ 0.24
SHMT2P34897 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
SHMT2P34897 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
SHMT2P34897 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.56■□□□□ 0.24
SHMT2P34897 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SHMT2P34897 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHMT2P34897 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SHMT2P34897 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SHMT2P34897 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.55■□□□□ 0.24
SHMT2P34897 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.55■□□□□ 0.24
SHMT2P34897 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.55■□□□□ 0.24
SHMT2P34897 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
SHMT2P34897 MIR574-201ENST00000385209 96 ntBASIC16.55■□□□□ 0.24
SHMT2P34897 MED15P5-201ENST00000423150 992 ntBASIC16.55■□□□□ 0.24
SHMT2P34897 VN2R19P-201ENST00000442399 1052 ntBASIC16.55■□□□□ 0.24
SHMT2P34897 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.55■□□□□ 0.24
SHMT2P34897 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.55■□□□□ 0.24
SHMT2P34897 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.55■□□□□ 0.24
SHMT2P34897 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.55■□□□□ 0.24
SHMT2P34897 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.55■□□□□ 0.24
SHMT2P34897 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.55■□□□□ 0.24
SHMT2P34897 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.55■□□□□ 0.24
SHMT2P34897 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SHMT2P34897 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.55■□□□□ 0.24
SHMT2P34897 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SHMT2P34897 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHMT2P34897 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SHMT2P34897 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
SHMT2P34897 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.54■□□□□ 0.24
SHMT2P34897 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.54■□□□□ 0.24
SHMT2P34897 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
SHMT2P34897 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms