Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA9P31269 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA9P31269 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA9P31269 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.46■□□□□ 0.39
HOXA9P31269 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
HOXA9P31269 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA9P31269 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
HOXA9P31269 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.46■□□□□ 0.39
HOXA9P31269 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA9P31269 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA9P31269 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA9P31269 HLA-H-201ENST00000383620 1096 ntBASIC17.46■□□□□ 0.39
HOXA9P31269 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.46■□□□□ 0.39
HOXA9P31269 AC005034.1-201ENST00000426657 489 ntBASIC17.46■□□□□ 0.39
HOXA9P31269 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.46■□□□□ 0.39
HOXA9P31269 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA9P31269 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.46■□□□□ 0.39
HOXA9P31269 HLA-V-204ENST00000476601 1289 ntBASIC17.46■□□□□ 0.39
HOXA9P31269 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA9P31269 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.46■□□□□ 0.39
HOXA9P31269 AC009118.2-201ENST00000613275 655 ntBASIC17.46■□□□□ 0.39
HOXA9P31269 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.46■□□□□ 0.39
HOXA9P31269 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA9P31269 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
HOXA9P31269 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
HOXA9P31269 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA9P31269 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA9P31269 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA9P31269 AC100757.3-201ENST00000622361 1406 ntBASIC17.46■□□□□ 0.39
HOXA9P31269 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
HOXA9P31269 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.46■□□□□ 0.38
HOXA9P31269 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXA9P31269 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXA9P31269 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
HOXA9P31269 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.45■□□□□ 0.38
HOXA9P31269 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.45■□□□□ 0.38
HOXA9P31269 TSSK5P-201ENST00000423978 907 ntBASIC17.45■□□□□ 0.38
HOXA9P31269 AC244107.1-201ENST00000442033 332 ntBASIC17.45■□□□□ 0.38
HOXA9P31269 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.45■□□□□ 0.38
HOXA9P31269 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.45■□□□□ 0.38
HOXA9P31269 PRYP6-201ENST00000514804 343 ntBASIC17.45■□□□□ 0.38
HOXA9P31269 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXA9P31269 AC027369.6-201ENST00000525520 931 ntBASIC17.45■□□□□ 0.38
HOXA9P31269 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXA9P31269 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
HOXA9P31269 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXA9P31269 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.45■□□□□ 0.38
HOXA9P31269 AL590560.3-201ENST00000623350 461 ntBASIC17.45■□□□□ 0.38
HOXA9P31269 FZD10-202ENST00000539839 3282 ntBASIC17.45■□□□□ 0.38
HOXA9P31269 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
HOXA9P31269 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
HOXA9P31269 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA9P31269 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA9P31269 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA9P31269 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
HOXA9P31269 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXA9P31269 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.44■□□□□ 0.38
HOXA9P31269 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
HOXA9P31269 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXA9P31269 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA9P31269 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA9P31269 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.44■□□□□ 0.38
HOXA9P31269 AL035456.1-201ENST00000456064 1369 ntBASIC17.44■□□□□ 0.38
HOXA9P31269 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA9P31269 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.44■□□□□ 0.38
HOXA9P31269 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXA9P31269 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
HOXA9P31269 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA9P31269 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA9P31269 MRPS18AP1-201ENST00000414458 589 ntBASIC17.44■□□□□ 0.38
HOXA9P31269 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.44■□□□□ 0.38
HOXA9P31269 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
HOXA9P31269 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXA9P31269 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXA9P31269 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA9P31269 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.44■□□□□ 0.38
HOXA9P31269 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.44■□□□□ 0.38
HOXA9P31269 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.44■□□□□ 0.38
HOXA9P31269 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXA9P31269 AC013467.2-201ENST00000605472 835 ntBASIC17.44■□□□□ 0.38
HOXA9P31269 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXA9P31269 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA9P31269 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms