Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.68■□□□□ 0.58
TPM1P09493 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.68■□□□□ 0.58
TPM1P09493 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.68■□□□□ 0.58
TPM1P09493 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.68■□□□□ 0.58
TPM1P09493 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 AC117947.1-201ENST00000427448 529 ntBASIC18.68■□□□□ 0.58
TPM1P09493 AC092647.4-201ENST00000457211 535 ntBASIC18.68■□□□□ 0.58
TPM1P09493 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.68■□□□□ 0.58
TPM1P09493 AC011840.4-201ENST00000578471 627 ntBASIC18.68■□□□□ 0.58
TPM1P09493 AL138831.2-201ENST00000606564 490 ntBASIC18.68■□□□□ 0.58
TPM1P09493 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
TPM1P09493 AL353593.2-201ENST00000602529 1483 ntBASIC18.68■□□□□ 0.58
TPM1P09493 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
TPM1P09493 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC18.68■□□□□ 0.58
TPM1P09493 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.68■□□□□ 0.58
TPM1P09493 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
TPM1P09493 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.68■□□□□ 0.58
TPM1P09493 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TPM1P09493 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.67■□□□□ 0.58
TPM1P09493 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
TPM1P09493 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
TPM1P09493 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.67■□□□□ 0.58
TPM1P09493 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.67■□□□□ 0.58
TPM1P09493 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 KRT18P38-201ENST00000449496 1282 ntBASIC18.67■□□□□ 0.58
TPM1P09493 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.67■□□□□ 0.58
TPM1P09493 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.67■□□□□ 0.58
TPM1P09493 AC124864.1-201ENST00000623408 392 ntBASIC18.67■□□□□ 0.58
TPM1P09493 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
TPM1P09493 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.67■□□□□ 0.58
TPM1P09493 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC18.67■□□□□ 0.58
TPM1P09493 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.67■□□□□ 0.58
TPM1P09493 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
TPM1P09493 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM1P09493 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.67■□□□□ 0.58
TPM1P09493 AL391256.1-201ENST00000443260 1855 ntBASIC18.67■□□□□ 0.58
TPM1P09493 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
TPM1P09493 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18.66■□□□□ 0.58
TPM1P09493 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
TPM1P09493 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM1P09493 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TPM1P09493 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM1P09493 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.66■□□□□ 0.58
TPM1P09493 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TPM1P09493 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM1P09493 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.66■□□□□ 0.58
TPM1P09493 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
TPM1P09493 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.66■□□□□ 0.58
TPM1P09493 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TPM1P09493 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM1P09493 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.66■□□□□ 0.58
TPM1P09493 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.66■□□□□ 0.58
TPM1P09493 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TPM1P09493 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM1P09493 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TPM1P09493 KLF4P1-201ENST00000412782 1185 ntBASIC18.66■□□□□ 0.58
TPM1P09493 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.66■□□□□ 0.58
TPM1P09493 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.66■□□□□ 0.58
TPM1P09493 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.66■□□□□ 0.58
TPM1P09493 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.66■□□□□ 0.58
TPM1P09493 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.66■□□□□ 0.58
TPM1P09493 AC073912.3-201ENST00000624414 853 ntBASIC18.66■□□□□ 0.58
TPM1P09493 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.66■□□□□ 0.58
TPM1P09493 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TPM1P09493 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms