Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
LDLRP01130 AC079328.2-201ENST00000561241 3354 ntBASIC16.4■□□□□ 0.22
LDLRP01130 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.4■□□□□ 0.22
LDLRP01130 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.4■□□□□ 0.22
LDLRP01130 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
LDLRP01130 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.39■□□□□ 0.22
LDLRP01130 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.39■□□□□ 0.22
LDLRP01130 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
LDLRP01130 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.39■□□□□ 0.21
LDLRP01130 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.39■□□□□ 0.21
LDLRP01130 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
LDLRP01130 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.39■□□□□ 0.21
LDLRP01130 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.39■□□□□ 0.21
LDLRP01130 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.39■□□□□ 0.21
LDLRP01130 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.39■□□□□ 0.21
LDLRP01130 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.39■□□□□ 0.21
LDLRP01130 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.39■□□□□ 0.21
LDLRP01130 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.39■□□□□ 0.21
LDLRP01130 AL591684.3-201ENST00000605187 298 ntBASIC16.39■□□□□ 0.21
LDLRP01130 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
LDLRP01130 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.39■□□□□ 0.21
LDLRP01130 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.39■□□□□ 0.21
LDLRP01130 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 BX276092.7-203ENST00000637198 1536 ntBASIC16.39■□□□□ 0.21
LDLRP01130 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDLRP01130 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
LDLRP01130 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.38■□□□□ 0.21
LDLRP01130 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
LDLRP01130 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 RNF216P1-203ENST00000404404 2427 ntBASIC16.38■□□□□ 0.21
LDLRP01130 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.38■□□□□ 0.21
LDLRP01130 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.38■□□□□ 0.21
LDLRP01130 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.38■□□□□ 0.21
LDLRP01130 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
LDLRP01130 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.38■□□□□ 0.21
LDLRP01130 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 PMS2P2-201ENST00000425039 1128 ntBASIC16.38■□□□□ 0.21
LDLRP01130 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.38■□□□□ 0.21
LDLRP01130 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.38■□□□□ 0.21
LDLRP01130 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.38■□□□□ 0.21
LDLRP01130 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.38■□□□□ 0.21
LDLRP01130 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.38■□□□□ 0.21
LDLRP01130 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.38■□□□□ 0.21
LDLRP01130 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.38■□□□□ 0.21
LDLRP01130 AL049840.3-201ENST00000602669 611 ntBASIC16.38■□□□□ 0.21
LDLRP01130 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
LDLRP01130 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
LDLRP01130 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.38■□□□□ 0.21
LDLRP01130 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.38■□□□□ 0.21
LDLRP01130 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.38■□□□□ 0.21
LDLRP01130 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 CYP2T1P-202ENST00000641596 2535 ntBASIC16.38■□□□□ 0.21
LDLRP01130 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDLRP01130 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
LDLRP01130 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms