Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
PRKNO60260 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 AC092171.3-201ENST00000610122 2651 ntBASIC15.71■□□□□ 0.11
PRKNO60260 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.71■□□□□ 0.11
PRKNO60260 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.71■□□□□ 0.11
PRKNO60260 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.71■□□□□ 0.11
PRKNO60260 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.71■□□□□ 0.11
PRKNO60260 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.71■□□□□ 0.11
PRKNO60260 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.71■□□□□ 0.11
PRKNO60260 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.71■□□□□ 0.11
PRKNO60260 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.71■□□□□ 0.11
PRKNO60260 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.71■□□□□ 0.11
PRKNO60260 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.71■□□□□ 0.11
PRKNO60260 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.71■□□□□ 0.11
PRKNO60260 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
PRKNO60260 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.71■□□□□ 0.11
PRKNO60260 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.71■□□□□ 0.11
PRKNO60260 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.71■□□□□ 0.11
PRKNO60260 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.71■□□□□ 0.11
PRKNO60260 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.71■□□□□ 0.11
PRKNO60260 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 UBALD1-205ENST00000590891 2641 ntBASIC15.71■□□□□ 0.11
PRKNO60260 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKNO60260 AC105020.1-201ENST00000435356 2205 ntBASIC15.71■□□□□ 0.1
PRKNO60260 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
PRKNO60260 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
PRKNO60260 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
PRKNO60260 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.71■□□□□ 0.1
PRKNO60260 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.1
PRKNO60260 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC15.71■□□□□ 0.1
PRKNO60260 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.7■□□□□ 0.1
PRKNO60260 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
PRKNO60260 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.7■□□□□ 0.1
PRKNO60260 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
PRKNO60260 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.7■□□□□ 0.1
PRKNO60260 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.7■□□□□ 0.1
PRKNO60260 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
PRKNO60260 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PRKNO60260 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.7■□□□□ 0.1
PRKNO60260 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.7■□□□□ 0.1
PRKNO60260 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.7■□□□□ 0.1
PRKNO60260 AL513480.1-201ENST00000451731 511 ntBASIC15.7■□□□□ 0.1
PRKNO60260 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.7■□□□□ 0.1
PRKNO60260 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.7■□□□□ 0.1
PRKNO60260 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
PRKNO60260 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.7■□□□□ 0.1
PRKNO60260 AC023141.13-201ENST00000604991 943 ntBASIC15.7■□□□□ 0.1
PRKNO60260 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.7■□□□□ 0.1
PRKNO60260 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
PRKNO60260 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
PRKNO60260 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PRKNO60260 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKNO60260 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.7■□□□□ 0.1
PRKNO60260 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PRKNO60260 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
PRKNO60260 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
PRKNO60260 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
PRKNO60260 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms