Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.49
FOXN3O00409 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.08■□□□□ 0.48
FOXN3O00409 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.08■□□□□ 0.48
FOXN3O00409 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
FOXN3O00409 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.08■□□□□ 0.48
FOXN3O00409 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.08■□□□□ 0.48
FOXN3O00409 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.08■□□□□ 0.48
FOXN3O00409 AC105339.3-201ENST00000560043 636 ntBASIC18.08■□□□□ 0.48
FOXN3O00409 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.08■□□□□ 0.48
FOXN3O00409 MPDU1-223ENST00000582151 728 ntBASIC18.08■□□□□ 0.48
FOXN3O00409 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.08■□□□□ 0.48
FOXN3O00409 AC104692.2-201ENST00000603054 253 ntBASIC18.08■□□□□ 0.48
FOXN3O00409 AL031008.1-201ENST00000619963 541 ntBASIC18.08■□□□□ 0.48
FOXN3O00409 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
FOXN3O00409 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.08■□□□□ 0.48
FOXN3O00409 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.08■□□□□ 0.48
FOXN3O00409 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
FOXN3O00409 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN3O00409 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
FOXN3O00409 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXN3O00409 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
FOXN3O00409 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXN3O00409 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.07■□□□□ 0.48
FOXN3O00409 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.07■□□□□ 0.48
FOXN3O00409 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 AF186996.4-201ENST00000467186 377 ntBASIC18.07■□□□□ 0.48
FOXN3O00409 AC107918.2-201ENST00000530817 355 ntBASIC18.07■□□□□ 0.48
FOXN3O00409 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.07■□□□□ 0.48
FOXN3O00409 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
FOXN3O00409 AL356488.2-201ENST00000602755 427 ntBASIC18.07■□□□□ 0.48
FOXN3O00409 AC008667.4-201ENST00000607370 168 ntBASIC18.07■□□□□ 0.48
FOXN3O00409 AL139011.1-202ENST00000642063 584 ntBASIC18.07■□□□□ 0.48
FOXN3O00409 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXN3O00409 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXN3O00409 AL671710.1-201ENST00000610245 2349 ntBASIC18.07■□□□□ 0.48
FOXN3O00409 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
FOXN3O00409 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.07■□□□□ 0.48
FOXN3O00409 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.07■□□□□ 0.48
FOXN3O00409 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN3O00409 AC006449.5-201ENST00000610658 2098 ntBASIC18.07■□□□□ 0.48
FOXN3O00409 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN3O00409 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXN3O00409 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXN3O00409 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN3O00409 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN3O00409 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
FOXN3O00409 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN3O00409 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN3O00409 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXN3O00409 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN3O00409 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
FOXN3O00409 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
FOXN3O00409 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXN3O00409 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
FOXN3O00409 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
FOXN3O00409 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN3O00409 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.06■□□□□ 0.48
FOXN3O00409 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXN3O00409 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.06■□□□□ 0.48
FOXN3O00409 PMS2P1-201ENST00000431037 1228 ntBASIC18.06■□□□□ 0.48
FOXN3O00409 HLA-J-202ENST00000469281 1241 ntBASIC18.06■□□□□ 0.48
FOXN3O00409 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms