Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 ME2P1-201ENST00000426028 1970 ntBASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMCH1Q9UPQ0 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 MIR1224-201ENST00000408193 85 ntBASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 FGFR3P6-201ENST00000457012 610 ntBASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 SART3-203ENST00000546611 1184 ntBASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 AC139887.3-201ENST00000568585 713 ntBASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 AL121772.3-201ENST00000610840 674 ntBASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMCH1Q9UPQ0 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 TSPY19P-201ENST00000418461 509 ntBASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 TSPY18P-201ENST00000441642 509 ntBASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 MTDHP4-201ENST00000600287 670 ntBASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 AC004706.3-202ENST00000621574 984 ntBASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms