Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 MTND6P24-201ENST00000440466 518 ntBASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 CDK4-206ENST00000549606 558 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 BANF1P1-201ENST00000553684 263 ntBASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 TP53TG3HP-202ENST00000569755 579 ntBASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 IFT20-216ENST00000588477 774 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 SIGLEC29P-201ENST00000599873 1114 ntBASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 RN7SL828P-201ENST00000607615 303 ntBASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 MIR6799-201ENST00000620297 69 ntBASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CCDC87Q9NVE4 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 WDR53-204ENST00000433160 887 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 AL589739.1-201ENST00000607720 493 ntBASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
CCDC87Q9NVE4 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC87Q9NVE4 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms