Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.47■□□□□ 0.87
RPAP1Q9BWH6 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 CBR1-202ENST00000399191 838 ntTSL 3 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 AC022145.2-201ENST00000598203 171 ntBASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 AC004835.2-201ENST00000603762 682 ntBASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 REXO1L3P-201ENST00000622202 1288 ntBASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 FLJ38576-201ENST00000623820 2459 ntBASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 CYP51A1P2-201ENST00000419457 1499 ntBASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 DDT-204ENST00000404092 805 ntTSL 3 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 AC004461.1-201ENST00000412461 403 ntBASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 AC087163.2-201ENST00000457299 853 ntBASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 AC105339.1-204ENST00000636249 355 ntBASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.46■□□□□ 0.87
RPAP1Q9BWH6 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
RPAP1Q9BWH6 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 AC092068.3-201ENST00000587894 2016 ntBASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 FALEC-201ENST00000416894 566 ntTSL 3 BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 DUX4L17-201ENST00000557360 1267 ntBASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 AC106028.4-201ENST00000614509 607 ntBASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RPAP1Q9BWH6 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 AC023141.5-201ENST00000458585 616 ntBASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 SLC25A6P2-201ENST00000497974 877 ntBASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC20.44■□□□□ 0.86
RPAP1Q9BWH6 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms