Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
VPS35Q96QK1 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS35Q96QK1 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS35Q96QK1 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS35Q96QK1 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS35Q96QK1 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.79■□□□□ 0.28
VPS35Q96QK1 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.79■□□□□ 0.28
VPS35Q96QK1 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS35Q96QK1 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS35Q96QK1 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 AC091167.2-201ENST00000579581 588 ntBASIC16.79■□□□□ 0.28
VPS35Q96QK1 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.79■□□□□ 0.28
VPS35Q96QK1 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS35Q96QK1 AC010507.1-201ENST00000633895 436 ntBASIC16.79■□□□□ 0.28
VPS35Q96QK1 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
VPS35Q96QK1 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 AC092068.3-201ENST00000587894 2016 ntBASIC16.79■□□□□ 0.28
VPS35Q96QK1 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS35Q96QK1 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS35Q96QK1 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS35Q96QK1 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS35Q96QK1 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS35Q96QK1 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS35Q96QK1 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS35Q96QK1 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS35Q96QK1 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS35Q96QK1 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS35Q96QK1 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 AL353732.1-201ENST00000569618 1459 ntBASIC16.78■□□□□ 0.28
VPS35Q96QK1 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS35Q96QK1 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS35Q96QK1 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS35Q96QK1 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 AC009053.2-201ENST00000563701 2365 ntBASIC16.78■□□□□ 0.28
VPS35Q96QK1 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VPS35Q96QK1 AL121761.2-201ENST00000598007 1648 ntBASIC16.78■□□□□ 0.28
VPS35Q96QK1 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS35Q96QK1 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS35Q96QK1 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS35Q96QK1 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
VPS35Q96QK1 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
VPS35Q96QK1 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
VPS35Q96QK1 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS35Q96QK1 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS35Q96QK1 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS35Q96QK1 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS35Q96QK1 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS35Q96QK1 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS35Q96QK1 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS35Q96QK1 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS35Q96QK1 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS35Q96QK1 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VPS35Q96QK1 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS35Q96QK1 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS35Q96QK1 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS35Q96QK1 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS35Q96QK1 KRT18P2-201ENST00000447938 1258 ntBASIC16.77■□□□□ 0.28
VPS35Q96QK1 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS35Q96QK1 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.77■□□□□ 0.28
VPS35Q96QK1 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS35Q96QK1 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.77■□□□□ 0.28
VPS35Q96QK1 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms