Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.04■□□□□ 0.16
COL21A1Q96P44 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 NKAPP1-205ENST00000585790 367 ntBASIC16.04■□□□□ 0.16
COL21A1Q96P44 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 AL121912.1-201ENST00000603683 238 ntBASIC16.04■□□□□ 0.16
COL21A1Q96P44 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.04■□□□□ 0.16
COL21A1Q96P44 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL21A1Q96P44 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.03■□□□□ 0.16
COL21A1Q96P44 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.03■□□□□ 0.16
COL21A1Q96P44 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 RNF216P1-203ENST00000404404 2427 ntBASIC16.03■□□□□ 0.16
COL21A1Q96P44 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.03■□□□□ 0.16
COL21A1Q96P44 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.03■□□□□ 0.16
COL21A1Q96P44 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.03■□□□□ 0.16
COL21A1Q96P44 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
COL21A1Q96P44 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
COL21A1Q96P44 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.03■□□□□ 0.16
COL21A1Q96P44 BX005266.1-201ENST00000473402 457 ntBASIC16.03■□□□□ 0.16
COL21A1Q96P44 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.03■□□□□ 0.16
COL21A1Q96P44 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.03■□□□□ 0.16
COL21A1Q96P44 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
COL21A1Q96P44 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.03■□□□□ 0.16
COL21A1Q96P44 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL21A1Q96P44 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL21A1Q96P44 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL21A1Q96P44 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL21A1Q96P44 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.02■□□□□ 0.16
COL21A1Q96P44 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL21A1Q96P44 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
COL21A1Q96P44 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL21A1Q96P44 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
COL21A1Q96P44 AC148477.5-201ENST00000625164 1645 ntBASIC16.02■□□□□ 0.16
COL21A1Q96P44 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.02■□□□□ 0.16
COL21A1Q96P44 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL21A1Q96P44 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.02■□□□□ 0.16
COL21A1Q96P44 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL21A1Q96P44 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL21A1Q96P44 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL21A1Q96P44 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.02■□□□□ 0.16
COL21A1Q96P44 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
COL21A1Q96P44 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL21A1Q96P44 PRYP5-201ENST00000451909 266 ntBASIC16.02■□□□□ 0.16
COL21A1Q96P44 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL21A1Q96P44 SART3-203ENST00000546611 1184 ntBASIC16.02■□□□□ 0.16
COL21A1Q96P44 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.02■□□□□ 0.16
COL21A1Q96P44 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.02■□□□□ 0.16
COL21A1Q96P44 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms