Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 AC023274.1-201ENST00000418278 595 ntBASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 FAM185BP-201ENST00000443595 716 ntBASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 PGAM5P1-201ENST00000518923 814 ntBASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 AC040169.1-201ENST00000565382 521 ntBASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 AC010507.1-201ENST00000633895 436 ntBASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 AL021920.2-201ENST00000624828 1351 ntBASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.94■□□□□ 0.14
PTCHD1Q96NR3 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 AC007064.4-201ENST00000637740 555 ntBASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 AC060834.1-201ENST00000443027 2032 ntBASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PTCHD1Q96NR3 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms