Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 AC097637.2-201ENST00000624096 1997 ntBASIC12.72□□□□□ -0.37
LINC00477Q96M19 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 DOC2GP-204ENST00000639052 2548 ntBASIC12.71□□□□□ -0.37
LINC00477Q96M19 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC12.71□□□□□ -0.37
LINC00477Q96M19 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 PCED1CP-201ENST00000419887 785 ntBASIC12.71□□□□□ -0.37
LINC00477Q96M19 THAP5-204ENST00000438865 868 ntTSL 2 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 LINC00265-3P-201ENST00000447588 903 ntBASIC12.71□□□□□ -0.37
LINC00477Q96M19 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 HLA-J-202ENST00000469281 1241 ntBASIC12.71□□□□□ -0.37
LINC00477Q96M19 S100A2-206ENST00000497140 697 ntTSL 2 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 AC104819.1-201ENST00000504587 486 ntBASIC12.71□□□□□ -0.37
LINC00477Q96M19 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 AP002414.4-201ENST00000589764 1148 ntBASIC12.71□□□□□ -0.37
LINC00477Q96M19 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC12.71□□□□□ -0.37
LINC00477Q96M19 AL391256.1-201ENST00000443260 1855 ntBASIC12.71□□□□□ -0.37
LINC00477Q96M19 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00477Q96M19 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LINC00477Q96M19 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
LINC00477Q96M19 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
LINC00477Q96M19 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC12.71□□□□□ -0.38
LINC00477Q96M19 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LINC00477Q96M19 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
LINC00477Q96M19 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC12.71□□□□□ -0.38
LINC00477Q96M19 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LINC00477Q96M19 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
LINC00477Q96M19 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LINC00477Q96M19 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
LINC00477Q96M19 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
LINC00477Q96M19 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 AL645728.1-201ENST00000366221 2101 ntBASIC12.7□□□□□ -0.38
LINC00477Q96M19 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms