Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 AC018470.1-201ENST00000624790 3129 ntBASIC17.13■□□□□ 0.33
CHFRQ96EP1 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CHFRQ96EP1 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHFRQ96EP1 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 BCL2-203ENST00000589955 5011 ntBASIC17.12■□□□□ 0.33
CHFRQ96EP1 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 FOXO1B-201ENST00000504678 1527 ntBASIC17.12■□□□□ 0.33
CHFRQ96EP1 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 MRPS18AP1-201ENST00000414458 589 ntBASIC17.12■□□□□ 0.33
CHFRQ96EP1 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 TERF1P3-201ENST00000505638 1227 ntBASIC17.12■□□□□ 0.33
CHFRQ96EP1 MIR4453-201ENST00000584019 89 ntBASIC17.12■□□□□ 0.33
CHFRQ96EP1 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 LINC02560-201ENST00000596379 459 ntBASIC17.12■□□□□ 0.33
CHFRQ96EP1 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 AC008761.3-201ENST00000624803 892 ntBASIC17.12■□□□□ 0.33
CHFRQ96EP1 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 AC016396.2-201ENST00000562575 1417 ntBASIC17.12■□□□□ 0.33
CHFRQ96EP1 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHFRQ96EP1 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
CHFRQ96EP1 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHFRQ96EP1 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHFRQ96EP1 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHFRQ96EP1 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHFRQ96EP1 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHFRQ96EP1 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.11■□□□□ 0.33
CHFRQ96EP1 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.11■□□□□ 0.33
CHFRQ96EP1 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHFRQ96EP1 HTR7P1-202ENST00000624664 4411 ntBASIC17.11■□□□□ 0.33
CHFRQ96EP1 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.11■□□□□ 0.33
CHFRQ96EP1 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHFRQ96EP1 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHFRQ96EP1 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CHFRQ96EP1 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CHFRQ96EP1 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CHFRQ96EP1 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.11■□□□□ 0.33
CHFRQ96EP1 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms