Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 F11R-206ENST00000621309 4770 ntTSL 5 BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 SLC4A1APP2-201ENST00000424054 1259 ntBASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 PGAM5P1-201ENST00000518923 814 ntBASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 CYB561-216ENST00000582297 897 ntTSL 3 BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 AC064836.3-201ENST00000607928 673 ntBASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 PI4KAP1-204ENST00000612579 1703 ntBASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 AC022211.2-201ENST00000585075 2527 ntBASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
CHMP4CQ96CF2 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 AC060834.1-201ENST00000443027 2032 ntBASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.17■□□□□ 0.82
CHMP4CQ96CF2 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 CRCP-205ENST00000431089 942 ntTSL 2 BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 AC010327.4-202ENST00000591484 748 ntBASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 TUBB8P12-201ENST00000308911 1335 ntBASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 TUBB7P-202ENST00000428444 1305 ntBASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 TUBB8P7-204ENST00000567960 1332 ntBASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP4CQ96CF2 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms