Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
ZNF540Q8NDQ6 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 HCG4P8-203ENST00000443049 980 ntBASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 KRT126P-201ENST00000549467 1181 ntBASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 TK1-204ENST00000590430 683 ntTSL 3 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ZNF540Q8NDQ6 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 SEC1P-202ENST00000473944 940 ntBASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 AC083849.1-201ENST00000615227 514 ntBASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 HYMAI.1-201ENST00000620949 238 ntBASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
ZNF540Q8NDQ6 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 AL365203.3-201ENST00000609742 2057 ntBASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms