Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.72■□□□□ 0.11
BEST3Q8N1M1 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.72■□□□□ 0.11
BEST3Q8N1M1 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.72■□□□□ 0.11
BEST3Q8N1M1 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.72■□□□□ 0.11
BEST3Q8N1M1 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
BEST3Q8N1M1 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
BEST3Q8N1M1 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
BEST3Q8N1M1 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
BEST3Q8N1M1 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BEST3Q8N1M1 ELL2P1-201ENST00000413990 1906 ntBASIC15.72■□□□□ 0.11
BEST3Q8N1M1 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BEST3Q8N1M1 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.72■□□□□ 0.11
BEST3Q8N1M1 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 AC129492.6-201ENST00000611383 1305 ntBASIC15.71■□□□□ 0.11
BEST3Q8N1M1 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 SNHG9-202ENST00000564014 471 ntBASIC15.71■□□□□ 0.11
BEST3Q8N1M1 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BEST3Q8N1M1 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.71■□□□□ 0.1
BEST3Q8N1M1 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.71■□□□□ 0.1
BEST3Q8N1M1 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
BEST3Q8N1M1 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
BEST3Q8N1M1 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
BEST3Q8N1M1 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
BEST3Q8N1M1 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.1
BEST3Q8N1M1 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
BEST3Q8N1M1 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
BEST3Q8N1M1 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
BEST3Q8N1M1 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
BEST3Q8N1M1 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 AL031432.2-201ENST00000566714 459 ntBASIC15.7■□□□□ 0.1
BEST3Q8N1M1 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 AL928711.1-201ENST00000570165 459 ntBASIC15.7■□□□□ 0.1
BEST3Q8N1M1 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 AC068137.2-201ENST00000605408 478 ntBASIC15.7■□□□□ 0.1
BEST3Q8N1M1 AC091812.2-201ENST00000619081 385 ntBASIC15.7■□□□□ 0.1
BEST3Q8N1M1 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BEST3Q8N1M1 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
BEST3Q8N1M1 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
BEST3Q8N1M1 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
BEST3Q8N1M1 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.69■□□□□ 0.1
BEST3Q8N1M1 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
BEST3Q8N1M1 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BEST3Q8N1M1 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.69■□□□□ 0.1
BEST3Q8N1M1 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
BEST3Q8N1M1 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
BEST3Q8N1M1 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
BEST3Q8N1M1 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BEST3Q8N1M1 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BEST3Q8N1M1 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BEST3Q8N1M1 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms