Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 OS9-205ENST00000413095 1660 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 AC145285.3-201ENST00000564603 959 ntBASIC20.43■□□□□ 0.86
VPS53Q5VIR6 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 AF228730.7-201ENST00000641842 219 ntBASIC20.43■□□□□ 0.86
VPS53Q5VIR6 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 FLJ38576-201ENST00000623820 2459 ntBASIC20.42■□□□□ 0.86
VPS53Q5VIR6 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 CYB561-216ENST00000582297 897 ntTSL 3 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 WDR88-203ENST00000592765 651 ntTSL 5 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 Z83851.2-201ENST00000609564 659 ntBASIC20.42■□□□□ 0.86
VPS53Q5VIR6 PGM5P2-202ENST00000637225 1043 ntBASIC20.42■□□□□ 0.86
VPS53Q5VIR6 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 AC002310.6-201ENST00000624451 1377 ntBASIC20.42■□□□□ 0.86
VPS53Q5VIR6 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC20.42■□□□□ 0.86
VPS53Q5VIR6 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS53Q5VIR6 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
VPS53Q5VIR6 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms