Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.61■□□□□ 0.57
PEX3P56589 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.61■□□□□ 0.57
PEX3P56589 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
PEX3P56589 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.6■□□□□ 0.57
PEX3P56589 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
PEX3P56589 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
PEX3P56589 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.6■□□□□ 0.57
PEX3P56589 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
PEX3P56589 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.6■□□□□ 0.57
PEX3P56589 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.6■□□□□ 0.57
PEX3P56589 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.6■□□□□ 0.57
PEX3P56589 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.6■□□□□ 0.57
PEX3P56589 PDPK2P-202ENST00000562415 1191 ntBASIC18.6■□□□□ 0.57
PEX3P56589 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.6■□□□□ 0.57
PEX3P56589 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.6■□□□□ 0.57
PEX3P56589 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.6■□□□□ 0.57
PEX3P56589 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.6■□□□□ 0.57
PEX3P56589 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.6■□□□□ 0.57
PEX3P56589 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PEX3P56589 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
PEX3P56589 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.59■□□□□ 0.57
PEX3P56589 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.59■□□□□ 0.57
PEX3P56589 AC012569.1-201ENST00000591191 1524 ntBASIC18.59■□□□□ 0.57
PEX3P56589 AL645728.1-201ENST00000366221 2101 ntBASIC18.59■□□□□ 0.57
PEX3P56589 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
PEX3P56589 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PEX3P56589 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
PEX3P56589 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.59■□□□□ 0.57
PEX3P56589 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
PEX3P56589 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.59■□□□□ 0.57
PEX3P56589 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.59■□□□□ 0.57
PEX3P56589 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
PEX3P56589 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.59■□□□□ 0.57
PEX3P56589 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.59■□□□□ 0.57
PEX3P56589 MIR4492-201ENST00000581627 80 ntBASIC18.59■□□□□ 0.57
PEX3P56589 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.59■□□□□ 0.57
PEX3P56589 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.59■□□□□ 0.57
PEX3P56589 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PEX3P56589 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PEX3P56589 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
PEX3P56589 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PEX3P56589 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
PEX3P56589 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PEX3P56589 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PEX3P56589 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PEX3P56589 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PEX3P56589 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PEX3P56589 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.58■□□□□ 0.57
PEX3P56589 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
PEX3P56589 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.58■□□□□ 0.57
PEX3P56589 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
PEX3P56589 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PEX3P56589 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
PEX3P56589 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.58■□□□□ 0.56
PEX3P56589 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PEX3P56589 HMGA1P7-201ENST00000406908 502 ntBASIC18.58■□□□□ 0.56
PEX3P56589 HCG4-201ENST00000418983 998 ntBASIC18.58■□□□□ 0.56
PEX3P56589 AC004832.2-201ENST00000426397 482 ntBASIC18.58■□□□□ 0.56
PEX3P56589 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.58■□□□□ 0.56
PEX3P56589 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.58■□□□□ 0.56
PEX3P56589 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.58■□□□□ 0.56
PEX3P56589 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.58■□□□□ 0.56
PEX3P56589 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.58■□□□□ 0.56
PEX3P56589 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.58■□□□□ 0.56
PEX3P56589 AL031432.2-201ENST00000566714 459 ntBASIC18.58■□□□□ 0.56
PEX3P56589 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms