Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC15.82■□□□□ 0.12
CDH12P55289 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.82■□□□□ 0.12
CDH12P55289 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC15.82■□□□□ 0.12
CDH12P55289 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.82■□□□□ 0.12
CDH12P55289 MINOS1P3-201ENST00000457048 203 ntBASIC15.82■□□□□ 0.12
CDH12P55289 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
CDH12P55289 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CDH12P55289 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH12P55289 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CDH12P55289 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH12P55289 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH12P55289 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.82■□□□□ 0.12
CDH12P55289 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH12P55289 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.82■□□□□ 0.12
CDH12P55289 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH12P55289 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH12P55289 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH12P55289 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.82■□□□□ 0.12
CDH12P55289 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH12P55289 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH12P55289 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CDH12P55289 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.82■□□□□ 0.12
CDH12P55289 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH12P55289 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.82■□□□□ 0.12
CDH12P55289 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
CDH12P55289 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH12P55289 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
CDH12P55289 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CDH12P55289 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 AC003669.1-201ENST00000334569 611 ntBASIC15.81■□□□□ 0.12
CDH12P55289 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
CDH12P55289 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 CTNS-203ENST00000399306 803 ntTSL 3 BASIC15.81■□□□□ 0.12
CDH12P55289 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CDH12P55289 AL513523.2-202ENST00000427283 2040 ntBASIC15.81■□□□□ 0.12
CDH12P55289 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH12P55289 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC15.81■□□□□ 0.12
CDH12P55289 NKTR-203ENST00000442970 646 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH12P55289 KRT17P6-201ENST00000453795 1220 ntBASIC15.81■□□□□ 0.12
CDH12P55289 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC15.81■□□□□ 0.12
CDH12P55289 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.81■□□□□ 0.12
CDH12P55289 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH12P55289 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC15.81■□□□□ 0.12
CDH12P55289 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.81■□□□□ 0.12
CDH12P55289 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC15.81■□□□□ 0.12
CDH12P55289 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH12P55289 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC15.81■□□□□ 0.12
CDH12P55289 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC15.81■□□□□ 0.12
CDH12P55289 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
CDH12P55289 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.81■□□□□ 0.12
CDH12P55289 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CDH12P55289 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH12P55289 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CDH12P55289 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CDH12P55289 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.8■□□□□ 0.12
CDH12P55289 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH12P55289 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
CDH12P55289 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH12P55289 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH12P55289 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH12P55289 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH12P55289 NSUN5P1-202ENST00000421140 1535 ntBASIC15.8■□□□□ 0.12
CDH12P55289 NSUN5P2-203ENST00000457352 1529 ntBASIC15.8■□□□□ 0.12
CDH12P55289 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH12P55289 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CDH12P55289 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH12P55289 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC15.8■□□□□ 0.12
CDH12P55289 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH12P55289 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH12P55289 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH12P55289 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH12P55289 KLF4P1-201ENST00000412782 1185 ntBASIC15.8■□□□□ 0.12
CDH12P55289 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH12P55289 LINC00265-3P-201ENST00000447588 903 ntBASIC15.8■□□□□ 0.12
CDH12P55289 CDV3-207ENST00000508481 661 ntTSL 3 BASIC15.8■□□□□ 0.12
CDH12P55289 AC096582.2-201ENST00000510860 516 ntBASIC15.8■□□□□ 0.12
CDH12P55289 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC15.8■□□□□ 0.12
CDH12P55289 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
CDH12P55289 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC15.8■□□□□ 0.12
CDH12P55289 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
CDH12P55289 BNIP3P18-201ENST00000593976 575 ntBASIC15.8■□□□□ 0.12
CDH12P55289 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH12P55289 AC073592.5-201ENST00000624854 528 ntBASIC15.8■□□□□ 0.12
CDH12P55289 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH12P55289 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH12P55289 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms