Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC087641.1-201ENST00000557561 1021 ntBASIC17.56■□□□□ 0.4
PTPN9P43378 AC034105.1-201ENST00000563488 319 ntBASIC17.56■□□□□ 0.4
PTPN9P43378 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.56■□□□□ 0.4
PTPN9P43378 CYP2A7P1-201ENST00000595391 815 ntBASIC17.56■□□□□ 0.4
PTPN9P43378 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.56■□□□□ 0.4
PTPN9P43378 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 BX640515.1-201ENST00000617215 977 ntBASIC17.56■□□□□ 0.4
PTPN9P43378 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.56■□□□□ 0.4
PTPN9P43378 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PTPN9P43378 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
PTPN9P43378 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.56■□□□□ 0.4
PTPN9P43378 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
PTPN9P43378 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
PTPN9P43378 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
PTPN9P43378 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.55■□□□□ 0.4
PTPN9P43378 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.55■□□□□ 0.4
PTPN9P43378 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.55■□□□□ 0.4
PTPN9P43378 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.55■□□□□ 0.4
PTPN9P43378 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.55■□□□□ 0.4
PTPN9P43378 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.55■□□□□ 0.4
PTPN9P43378 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.55■□□□□ 0.4
PTPN9P43378 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.55■□□□□ 0.4
PTPN9P43378 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.55■□□□□ 0.4
PTPN9P43378 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.55■□□□□ 0.4
PTPN9P43378 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.55■□□□□ 0.4
PTPN9P43378 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.55■□□□□ 0.4
PTPN9P43378 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.55■□□□□ 0.4
PTPN9P43378 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.55■□□□□ 0.4
PTPN9P43378 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.55■□□□□ 0.4
PTPN9P43378 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.55■□□□□ 0.4
PTPN9P43378 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.55■□□□□ 0.4
PTPN9P43378 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
PTPN9P43378 AP001350.2-201ENST00000625104 1094 ntBASIC17.55■□□□□ 0.4
PTPN9P43378 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
PTPN9P43378 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
PTPN9P43378 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
PTPN9P43378 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.55■□□□□ 0.4
PTPN9P43378 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
PTPN9P43378 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 AC104109.2-201ENST00000602919 1418 ntBASIC17.55■□□□□ 0.4
PTPN9P43378 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN9P43378 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PTPN9P43378 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN9P43378 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.54■□□□□ 0.4
PTPN9P43378 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.54■□□□□ 0.4
PTPN9P43378 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN9P43378 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN9P43378 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN9P43378 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.54■□□□□ 0.4
PTPN9P43378 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN9P43378 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN9P43378 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.54■□□□□ 0.4
PTPN9P43378 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN9P43378 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN9P43378 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN9P43378 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN9P43378 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN9P43378 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PTPN9P43378 AL590627.1-203ENST00000421194 1026 ntBASIC17.54■□□□□ 0.4
PTPN9P43378 RPL13AP23-201ENST00000480739 586 ntBASIC17.54■□□□□ 0.4
PTPN9P43378 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PTPN9P43378 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.54■□□□□ 0.4
PTPN9P43378 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.54■□□□□ 0.4
PTPN9P43378 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN9P43378 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN9P43378 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN9P43378 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
PTPN9P43378 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.54■□□□□ 0.4
PTPN9P43378 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
PTPN9P43378 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.54■□□□□ 0.4
PTPN9P43378 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN9P43378 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN9P43378 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN9P43378 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms