Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 SLC25A1P3-201ENST00000395415 828 ntBASIC16.6■□□□□ 0.25
SHMT2P34897 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.6■□□□□ 0.25
SHMT2P34897 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.6■□□□□ 0.25
SHMT2P34897 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
SHMT2P34897 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.6■□□□□ 0.25
SHMT2P34897 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.6■□□□□ 0.25
SHMT2P34897 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.6■□□□□ 0.25
SHMT2P34897 AC034105.1-201ENST00000563488 319 ntBASIC16.6■□□□□ 0.25
SHMT2P34897 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.6■□□□□ 0.25
SHMT2P34897 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.6■□□□□ 0.25
SHMT2P34897 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.6■□□□□ 0.25
SHMT2P34897 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.6■□□□□ 0.25
SHMT2P34897 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.6■□□□□ 0.25
SHMT2P34897 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SHMT2P34897 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SHMT2P34897 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
SHMT2P34897 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHMT2P34897 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.59■□□□□ 0.25
SHMT2P34897 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHMT2P34897 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.59■□□□□ 0.25
SHMT2P34897 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SHMT2P34897 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.59■□□□□ 0.25
SHMT2P34897 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHMT2P34897 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.59■□□□□ 0.25
SHMT2P34897 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
SHMT2P34897 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHMT2P34897 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHMT2P34897 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHMT2P34897 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHMT2P34897 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHMT2P34897 PMS2P1-201ENST00000431037 1228 ntBASIC16.59■□□□□ 0.25
SHMT2P34897 PRSS29P-201ENST00000440800 595 ntBASIC16.59■□□□□ 0.25
SHMT2P34897 PAWRP1-201ENST00000451083 565 ntBASIC16.59■□□□□ 0.25
SHMT2P34897 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.59■□□□□ 0.25
SHMT2P34897 MIR4751-201ENST00000578027 74 ntBASIC16.59■□□□□ 0.25
SHMT2P34897 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.59■□□□□ 0.25
SHMT2P34897 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.59■□□□□ 0.25
SHMT2P34897 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.59■□□□□ 0.25
SHMT2P34897 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
SHMT2P34897 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.59■□□□□ 0.25
SHMT2P34897 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHMT2P34897 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHMT2P34897 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.59■□□□□ 0.25
SHMT2P34897 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHMT2P34897 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHMT2P34897 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHMT2P34897 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SHMT2P34897 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.59■□□□□ 0.25
SHMT2P34897 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SHMT2P34897 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SHMT2P34897 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SHMT2P34897 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.58■□□□□ 0.25
SHMT2P34897 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
SHMT2P34897 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SHMT2P34897 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SHMT2P34897 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SHMT2P34897 DOC2GP-204ENST00000639052 2548 ntBASIC16.58■□□□□ 0.25
SHMT2P34897 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SHMT2P34897 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHMT2P34897 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHMT2P34897 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
SHMT2P34897 AP000347.1-202ENST00000435868 847 ntBASIC16.58■□□□□ 0.24
SHMT2P34897 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SHMT2P34897 AL591424.1-201ENST00000442569 1213 ntBASIC16.58■□□□□ 0.24
SHMT2P34897 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.58■□□□□ 0.24
SHMT2P34897 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.58■□□□□ 0.24
SHMT2P34897 AC010654.1-201ENST00000615722 808 ntBASIC16.58■□□□□ 0.24
SHMT2P34897 AC004790.2-201ENST00000623588 572 ntBASIC16.58■□□□□ 0.24
SHMT2P34897 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.58■□□□□ 0.24
SHMT2P34897 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
SHMT2P34897 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.58■□□□□ 0.24
SHMT2P34897 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.58■□□□□ 0.24
SHMT2P34897 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHMT2P34897 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.58■□□□□ 0.24
SHMT2P34897 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.58■□□□□ 0.24
SHMT2P34897 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHMT2P34897 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHMT2P34897 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
SHMT2P34897 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
SHMT2P34897 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.57■□□□□ 0.24
SHMT2P34897 FLJ38576-201ENST00000623820 2459 ntBASIC16.57■□□□□ 0.24
SHMT2P34897 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHMT2P34897 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHMT2P34897 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms