Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 IRF5-214ENST00000613821 595 ntTSL 5 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 CICP6-201ENST00000457191 2729 ntBASIC12.94□□□□□ -0.34
HLA-DMBP28068 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 NUS1P1-201ENST00000446295 882 ntBASIC12.94□□□□□ -0.34
HLA-DMBP28068 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 SKP2-204ENST00000508514 821 ntTSL 3 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 AC074051.2-201ENST00000565115 352 ntBASIC12.94□□□□□ -0.34
HLA-DMBP28068 AC012615.1-201ENST00000565797 1299 ntBASIC12.94□□□□□ -0.34
HLA-DMBP28068 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC12.94□□□□□ -0.34
HLA-DMBP28068 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DMBP28068 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 AL645728.1-201ENST00000366221 2101 ntBASIC12.93□□□□□ -0.34
HLA-DMBP28068 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 CTNS-203ENST00000399306 803 ntTSL 3 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 CDV3-207ENST00000508481 661 ntTSL 3 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 LINC01711-201ENST00000598340 967 ntBASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms