Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.86■□□□□ 0.29
MSH3P20585 AC009947.1-201ENST00000444350 727 ntBASIC16.86■□□□□ 0.29
MSH3P20585 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.86■□□□□ 0.29
MSH3P20585 AC087163.2-201ENST00000457299 853 ntBASIC16.86■□□□□ 0.29
MSH3P20585 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.86■□□□□ 0.29
MSH3P20585 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.86■□□□□ 0.29
MSH3P20585 Z83851.2-201ENST00000609564 659 ntBASIC16.86■□□□□ 0.29
MSH3P20585 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.86■□□□□ 0.29
MSH3P20585 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.86■□□□□ 0.29
MSH3P20585 AC104109.2-201ENST00000602919 1418 ntBASIC16.86■□□□□ 0.29
MSH3P20585 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.86■□□□□ 0.29
MSH3P20585 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.86■□□□□ 0.29
MSH3P20585 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH3P20585 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.85■□□□□ 0.29
MSH3P20585 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.85■□□□□ 0.29
MSH3P20585 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.85■□□□□ 0.29
MSH3P20585 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.85■□□□□ 0.29
MSH3P20585 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.85■□□□□ 0.29
MSH3P20585 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
MSH3P20585 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.85■□□□□ 0.29
MSH3P20585 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.85■□□□□ 0.29
MSH3P20585 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.85■□□□□ 0.29
MSH3P20585 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.85■□□□□ 0.29
MSH3P20585 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.85■□□□□ 0.29
MSH3P20585 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.85■□□□□ 0.29
MSH3P20585 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.85■□□□□ 0.29
MSH3P20585 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 ZNF259P1-201ENST00000407656 1365 ntBASIC16.85■□□□□ 0.29
MSH3P20585 AL021920.2-201ENST00000624828 1351 ntBASIC16.85■□□□□ 0.29
MSH3P20585 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.85■□□□□ 0.29
MSH3P20585 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
MSH3P20585 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.85■□□□□ 0.29
MSH3P20585 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH3P20585 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.84■□□□□ 0.29
MSH3P20585 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
MSH3P20585 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.84■□□□□ 0.29
MSH3P20585 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
MSH3P20585 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
MSH3P20585 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.84■□□□□ 0.29
MSH3P20585 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 AC060834.1-201ENST00000443027 2032 ntBASIC16.84■□□□□ 0.29
MSH3P20585 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.84■□□□□ 0.29
MSH3P20585 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.84■□□□□ 0.29
MSH3P20585 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.84■□□□□ 0.29
MSH3P20585 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.84■□□□□ 0.29
MSH3P20585 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.84■□□□□ 0.29
MSH3P20585 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.84■□□□□ 0.29
MSH3P20585 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
MSH3P20585 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.84■□□□□ 0.29
MSH3P20585 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.84■□□□□ 0.29
MSH3P20585 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.84■□□□□ 0.29
MSH3P20585 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.84■□□□□ 0.29
MSH3P20585 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.84■□□□□ 0.29
MSH3P20585 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.84■□□□□ 0.29
MSH3P20585 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH3P20585 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
MSH3P20585 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms