Protein–RNA interactions for Protein: P19838

NFKB1, Nuclear factor NF-kappa-B p105 subunit, humanhuman

Predictions only

Length 968 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1P19838 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.22■□□□□ 0.35
NFKB1P19838 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.22■□□□□ 0.35
NFKB1P19838 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NFKB1P19838 TOP3BP1-201ENST00000420768 1380 ntBASIC17.22■□□□□ 0.35
NFKB1P19838 AL118508.1-201ENST00000613502 2345 ntBASIC17.22■□□□□ 0.35
NFKB1P19838 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.22■□□□□ 0.35
NFKB1P19838 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NFKB1P19838 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.22■□□□□ 0.35
NFKB1P19838 HLA-A-202ENST00000376806 1854 ntBASIC17.22■□□□□ 0.35
NFKB1P19838 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NFKB1P19838 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.22■□□□□ 0.35
NFKB1P19838 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NFKB1P19838 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NFKB1P19838 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.21■□□□□ 0.35
NFKB1P19838 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.21■□□□□ 0.35
NFKB1P19838 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.21■□□□□ 0.35
NFKB1P19838 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NFKB1P19838 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
NFKB1P19838 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.21■□□□□ 0.35
NFKB1P19838 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
NFKB1P19838 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
NFKB1P19838 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
NFKB1P19838 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NFKB1P19838 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NFKB1P19838 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.21■□□□□ 0.35
NFKB1P19838 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NFKB1P19838 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.21■□□□□ 0.35
NFKB1P19838 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.21■□□□□ 0.35
NFKB1P19838 AL160237.2-201ENST00000556165 472 ntBASIC17.21■□□□□ 0.35
NFKB1P19838 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.21■□□□□ 0.35
NFKB1P19838 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.21■□□□□ 0.35
NFKB1P19838 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.21■□□□□ 0.35
NFKB1P19838 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.21■□□□□ 0.35
NFKB1P19838 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.21■□□□□ 0.35
NFKB1P19838 AL049840.3-201ENST00000602669 611 ntBASIC17.21■□□□□ 0.35
NFKB1P19838 MIR7706-201ENST00000613747 67 ntBASIC17.21■□□□□ 0.35
NFKB1P19838 REXO1L3P-201ENST00000622202 1288 ntBASIC17.21■□□□□ 0.35
NFKB1P19838 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.21■□□□□ 0.35
NFKB1P19838 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
NFKB1P19838 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
NFKB1P19838 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.21■□□□□ 0.35
NFKB1P19838 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NFKB1P19838 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.21■□□□□ 0.35
NFKB1P19838 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.21■□□□□ 0.35
NFKB1P19838 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.21■□□□□ 0.35
NFKB1P19838 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NFKB1P19838 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
NFKB1P19838 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
NFKB1P19838 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NFKB1P19838 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NFKB1P19838 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NFKB1P19838 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
NFKB1P19838 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.21■□□□□ 0.34
NFKB1P19838 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.2■□□□□ 0.34
NFKB1P19838 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 AC079328.2-201ENST00000561241 3354 ntBASIC17.2■□□□□ 0.34
NFKB1P19838 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.2■□□□□ 0.34
NFKB1P19838 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.2■□□□□ 0.34
NFKB1P19838 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
NFKB1P19838 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.2■□□□□ 0.34
NFKB1P19838 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.2■□□□□ 0.34
NFKB1P19838 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.2■□□□□ 0.34
NFKB1P19838 MRPL3P1-201ENST00000400109 1033 ntBASIC17.2■□□□□ 0.34
NFKB1P19838 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
NFKB1P19838 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.2■□□□□ 0.34
NFKB1P19838 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
NFKB1P19838 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.2■□□□□ 0.34
NFKB1P19838 AC008667.4-201ENST00000607370 168 ntBASIC17.2■□□□□ 0.34
NFKB1P19838 AL773604.1-201ENST00000617417 272 ntBASIC17.2■□□□□ 0.34
NFKB1P19838 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.2■□□□□ 0.34
NFKB1P19838 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.2■□□□□ 0.34
NFKB1P19838 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.2■□□□□ 0.34
NFKB1P19838 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
NFKB1P19838 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.2■□□□□ 0.34
NFKB1P19838 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.2■□□□□ 0.34
NFKB1P19838 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.2■□□□□ 0.34
NFKB1P19838 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NFKB1P19838 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
NFKB1P19838 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NFKB1P19838 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.19■□□□□ 0.34
NFKB1P19838 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NFKB1P19838 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms