Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CTDNEP1O95476 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CTDNEP1O95476 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CTDNEP1O95476 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.55■□□□□ 0.72
CTDNEP1O95476 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CTDNEP1O95476 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CTDNEP1O95476 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.55■□□□□ 0.72
CTDNEP1O95476 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.55■□□□□ 0.72
CTDNEP1O95476 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
CTDNEP1O95476 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.55■□□□□ 0.72
CTDNEP1O95476 CYP2A7P1-201ENST00000595391 815 ntBASIC19.55■□□□□ 0.72
CTDNEP1O95476 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CTDNEP1O95476 GGT4P-201ENST00000623672 1708 ntBASIC19.55■□□□□ 0.72
CTDNEP1O95476 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.55■□□□□ 0.72
CTDNEP1O95476 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CTDNEP1O95476 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 ME2P1-201ENST00000426028 1970 ntBASIC19.55■□□□□ 0.72
CTDNEP1O95476 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTDNEP1O95476 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.54■□□□□ 0.72
CTDNEP1O95476 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.54■□□□□ 0.72
CTDNEP1O95476 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CTDNEP1O95476 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.54■□□□□ 0.72
CTDNEP1O95476 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CTDNEP1O95476 DOC2GP-204ENST00000639052 2548 ntBASIC19.54■□□□□ 0.72
CTDNEP1O95476 KRT8P39-201ENST00000396270 1433 ntBASIC19.54■□□□□ 0.72
CTDNEP1O95476 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CTDNEP1O95476 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CTDNEP1O95476 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 AC098831.1-202ENST00000438821 336 ntBASIC19.54■□□□□ 0.72
CTDNEP1O95476 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.54■□□□□ 0.72
CTDNEP1O95476 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.54■□□□□ 0.72
CTDNEP1O95476 ACTL9-202ENST00000612068 1252 ntBASIC19.54■□□□□ 0.72
CTDNEP1O95476 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.54■□□□□ 0.72
CTDNEP1O95476 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.54■□□□□ 0.72
CTDNEP1O95476 AC005593.1-201ENST00000624894 515 ntBASIC19.54■□□□□ 0.72
CTDNEP1O95476 GGT3P-204ENST00000453783 1664 ntBASIC19.54■□□□□ 0.72
CTDNEP1O95476 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 AL031731.1-201ENST00000642131 2094 ntBASIC19.54■□□□□ 0.72
CTDNEP1O95476 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 AL353732.1-201ENST00000569618 1459 ntBASIC19.54■□□□□ 0.72
CTDNEP1O95476 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTDNEP1O95476 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CTDNEP1O95476 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
CTDNEP1O95476 HLA-A-201ENST00000376802 1334 ntBASIC19.53■□□□□ 0.72
CTDNEP1O95476 AC129492.6-201ENST00000611383 1305 ntBASIC19.53■□□□□ 0.72
CTDNEP1O95476 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTDNEP1O95476 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTDNEP1O95476 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.53■□□□□ 0.72
CTDNEP1O95476 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTDNEP1O95476 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CTDNEP1O95476 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC19.53■□□□□ 0.72
CTDNEP1O95476 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.53■□□□□ 0.72
CTDNEP1O95476 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTDNEP1O95476 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.53■□□□□ 0.72
CTDNEP1O95476 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.53■□□□□ 0.72
CTDNEP1O95476 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.53■□□□□ 0.72
CTDNEP1O95476 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTDNEP1O95476 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTDNEP1O95476 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
CTDNEP1O95476 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.53■□□□□ 0.72
CTDNEP1O95476 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.53■□□□□ 0.72
CTDNEP1O95476 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTDNEP1O95476 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CTDNEP1O95476 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTDNEP1O95476 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CTDNEP1O95476 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CTDNEP1O95476 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CTDNEP1O95476 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
CTDNEP1O95476 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CTDNEP1O95476 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.52■□□□□ 0.72
CTDNEP1O95476 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CTDNEP1O95476 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms