Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 GPS2P2-201ENST00000430745 888 ntBASIC21.29■■□□□ 1
NPHP1O15259 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
NPHP1O15259 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC21.29■■□□□ 1
NPHP1O15259 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC21.29■■□□□ 1
NPHP1O15259 KRT8P23-201ENST00000560090 1207 ntBASIC21.29■■□□□ 1
NPHP1O15259 AC012645.4-201ENST00000610691 1061 ntBASIC21.29■■□□□ 1
NPHP1O15259 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC21.29■■□□□ 1
NPHP1O15259 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.29■■□□□ 1
NPHP1O15259 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.29■■□□□ 1
NPHP1O15259 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP1O15259 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP1O15259 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
NPHP1O15259 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP1O15259 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.29■■□□□ 1
NPHP1O15259 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC21.29■■□□□ 1
NPHP1O15259 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC21.28■■□□□ 1
NPHP1O15259 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP1O15259 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP1O15259 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC21.28■■□□□ 1
NPHP1O15259 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP1O15259 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
NPHP1O15259 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC21.28■■□□□ 1
NPHP1O15259 WRB-204ENST00000398753 699 ntTSL 3 BASIC21.28■■□□□ 1
NPHP1O15259 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC21.28■■□□□ 1
NPHP1O15259 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC21.28■■□□□ 1
NPHP1O15259 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC21.28■■□□□ 1
NPHP1O15259 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP1O15259 YTHDF3-AS1-201ENST00000603538 718 ntBASIC21.28■■□□□ 1
NPHP1O15259 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
NPHP1O15259 STK24-203ENST00000397517 4578 ntTSL 2 BASIC21.28■■□□□ 1
NPHP1O15259 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC21.28■■□□□ 1
NPHP1O15259 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC21.28■■□□□ 1
NPHP1O15259 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.28■■□□□ 1
NPHP1O15259 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21.28■■□□□ 1
NPHP1O15259 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP1O15259 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP1O15259 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP1O15259 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC21.27■■□□□ 1
NPHP1O15259 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC21.27■■□□□ 1
NPHP1O15259 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
NPHP1O15259 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP1O15259 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
NPHP1O15259 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP1O15259 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP1O15259 UGT1A2P-201ENST00000454886 866 ntBASIC21.27■■□□□ 1
NPHP1O15259 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
NPHP1O15259 AC069120.2-201ENST00000524091 540 ntBASIC21.27■■□□□ 1
NPHP1O15259 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC21.27■■□□□ 1
NPHP1O15259 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC21.27■■□□□ 1
NPHP1O15259 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC21.27■■□□□ 1
NPHP1O15259 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.27■■□□□ 1
NPHP1O15259 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP1O15259 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
NPHP1O15259 AC106820.2-201ENST00000563775 3264 ntBASIC21.27■■□□□ 1
NPHP1O15259 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC21.27■■□□□ 1
NPHP1O15259 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP1O15259 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
NPHP1O15259 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
NPHP1O15259 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC21.27■□□□□ 0.99
NPHP1O15259 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
NPHP1O15259 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
NPHP1O15259 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 LYSMD4-203ENST00000378904 2122 ntBASIC21.26■□□□□ 0.99
NPHP1O15259 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
NPHP1O15259 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.26■□□□□ 0.99
NPHP1O15259 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 COPE-202ENST00000349893 948 ntTSL 2 BASIC21.26■□□□□ 0.99
NPHP1O15259 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
NPHP1O15259 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
NPHP1O15259 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
NPHP1O15259 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC21.26■□□□□ 0.99
NPHP1O15259 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC21.26■□□□□ 0.99
NPHP1O15259 PUDP-206ENST00000540122 825 ntTSL 2 BASIC21.26■□□□□ 0.99
NPHP1O15259 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
NPHP1O15259 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
NPHP1O15259 RAB34-224ENST00000636513 888 ntTSL 5 BASIC21.26■□□□□ 0.99
NPHP1O15259 PCDHB18P-201ENST00000524813 2368 ntBASIC21.26■□□□□ 0.99
NPHP1O15259 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC21.26■□□□□ 0.99
NPHP1O15259 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
NPHP1O15259 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.26■□□□□ 0.99
NPHP1O15259 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP1O15259 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC21.26■□□□□ 0.99
NPHP1O15259 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP1O15259 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP1O15259 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms