Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 YBX1P5-201ENST00000509441 847 ntBASIC18.04■□□□□ 0.48
SIX4Q9UIU6 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 AC099522.2-201ENST00000607001 744 ntBASIC18.04■□□□□ 0.48
SIX4Q9UIU6 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 AP001350.2-201ENST00000625104 1094 ntBASIC18.04■□□□□ 0.48
SIX4Q9UIU6 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.03■□□□□ 0.48
SIX4Q9UIU6 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 AL009183.1-201ENST00000603760 355 ntBASIC18.03■□□□□ 0.48
SIX4Q9UIU6 AL031055.1-201ENST00000606362 631 ntBASIC18.03■□□□□ 0.48
SIX4Q9UIU6 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SIX4Q9UIU6 BCL2-203ENST00000589955 5011 ntBASIC18.03■□□□□ 0.48
SIX4Q9UIU6 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 AP002490.2-201ENST00000524791 560 ntBASIC18.02■□□□□ 0.48
SIX4Q9UIU6 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.02■□□□□ 0.48
SIX4Q9UIU6 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
SIX4Q9UIU6 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
SIX4Q9UIU6 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
SIX4Q9UIU6 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SIX4Q9UIU6 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
SIX4Q9UIU6 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SIX4Q9UIU6 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
SIX4Q9UIU6 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
SIX4Q9UIU6 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms