Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 CRB3P1-201ENST00000449338 276 ntBASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 MEIS3P1-201ENST00000495167 958 ntBASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 AC069120.2-201ENST00000524091 540 ntBASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 KRT8P23-201ENST00000560090 1207 ntBASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 AC027307.3-201ENST00000594262 1100 ntBASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 AL158211.3-201ENST00000607385 239 ntBASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 Metazoa_SRP.96-201ENST00000621315 318 ntBASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.42
LIMD1Q9UGP4 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
LIMD1Q9UGP4 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 OR8S1-201ENST00000310194 1080 ntBASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 HMGA1P7-201ENST00000406908 502 ntBASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LIMD1Q9UGP4 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 CR383656.12-201ENST00000549567 513 ntBASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 MIR6080-201ENST00000617359 66 ntBASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 AL358472.5-202ENST00000641448 1267 ntBASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 REXO1L9P-201ENST00000604264 2108 ntBASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.63■□□□□ 0.41
LIMD1Q9UGP4 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms