Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.14■□□□□ 0.5
SIX2Q9NPC8 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 IGHV3-65-201ENST00000523210 341 ntBASIC18.14■□□□□ 0.49
SIX2Q9NPC8 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX2Q9NPC8 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 CYP2T1P-202ENST00000641596 2535 ntBASIC18.13■□□□□ 0.49
SIX2Q9NPC8 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 GGT3P-204ENST00000453783 1664 ntBASIC18.13■□□□□ 0.49
SIX2Q9NPC8 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 AC131009.4-201ENST00000624048 1740 ntBASIC18.13■□□□□ 0.49
SIX2Q9NPC8 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 KRT18P67-201ENST00000432816 1264 ntBASIC18.13■□□□□ 0.49
SIX2Q9NPC8 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 OR7E47P-204ENST00000575924 449 ntBASIC18.13■□□□□ 0.49
SIX2Q9NPC8 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 AC091167.2-201ENST00000579581 588 ntBASIC18.13■□□□□ 0.49
SIX2Q9NPC8 AL356488.2-201ENST00000602755 427 ntBASIC18.13■□□□□ 0.49
SIX2Q9NPC8 AC104692.2-201ENST00000603054 253 ntBASIC18.13■□□□□ 0.49
SIX2Q9NPC8 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX2Q9NPC8 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 AC105339.3-201ENST00000560043 636 ntBASIC18.12■□□□□ 0.49
SIX2Q9NPC8 RN7SL510P-201ENST00000581311 263 ntBASIC18.12■□□□□ 0.49
SIX2Q9NPC8 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 AL031008.1-201ENST00000619963 541 ntBASIC18.12■□□□□ 0.49
SIX2Q9NPC8 FAM215A-202ENST00000632077 792 ntBASIC18.12■□□□□ 0.49
SIX2Q9NPC8 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.12■□□□□ 0.49
SIX2Q9NPC8 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 GGT4P-201ENST00000623672 1708 ntBASIC18.12■□□□□ 0.49
SIX2Q9NPC8 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.12■□□□□ 0.49
SIX2Q9NPC8 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 AC026691.1-201ENST00000602502 2017 ntBASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms