Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VTA1Q9NP79 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VTA1Q9NP79 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
VTA1Q9NP79 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VTA1Q9NP79 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VTA1Q9NP79 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 MIR661-201ENST00000384842 89 ntBASIC18.82■□□□□ 0.6
VTA1Q9NP79 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.82■□□□□ 0.6
VTA1Q9NP79 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VTA1Q9NP79 AL512638.1-201ENST00000457493 794 ntBASIC18.82■□□□□ 0.6
VTA1Q9NP79 POLD4-211ENST00000539074 714 ntTSL 3 BASIC18.82■□□□□ 0.6
VTA1Q9NP79 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.82■□□□□ 0.6
VTA1Q9NP79 RARRES2P9-201ENST00000565168 469 ntBASIC18.82■□□□□ 0.6
VTA1Q9NP79 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.82■□□□□ 0.6
VTA1Q9NP79 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.82■□□□□ 0.6
VTA1Q9NP79 AC018529.1-201ENST00000613063 361 ntBASIC18.82■□□□□ 0.6
VTA1Q9NP79 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
VTA1Q9NP79 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VTA1Q9NP79 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VTA1Q9NP79 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.81■□□□□ 0.6
VTA1Q9NP79 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.81■□□□□ 0.6
VTA1Q9NP79 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VTA1Q9NP79 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VTA1Q9NP79 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VTA1Q9NP79 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VTA1Q9NP79 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VTA1Q9NP79 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VTA1Q9NP79 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VTA1Q9NP79 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VTA1Q9NP79 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
VTA1Q9NP79 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VTA1Q9NP79 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 AP3S2-216ENST00000617003 1561 ntBASIC18.8■□□□□ 0.6
VTA1Q9NP79 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
VTA1Q9NP79 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms