Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TTC28Q96AY4 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TTC28Q96AY4 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TTC28Q96AY4 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TTC28Q96AY4 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TTC28Q96AY4 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TTC28Q96AY4 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.9■□□□□ 0.3
TTC28Q96AY4 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
TTC28Q96AY4 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TTC28Q96AY4 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TTC28Q96AY4 AC098859.1-201ENST00000502915 1238 ntBASIC16.9■□□□□ 0.3
TTC28Q96AY4 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.9■□□□□ 0.3
TTC28Q96AY4 AC020914.3-201ENST00000594712 304 ntBASIC16.9■□□□□ 0.3
TTC28Q96AY4 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC16.9■□□□□ 0.3
TTC28Q96AY4 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TTC28Q96AY4 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TTC28Q96AY4 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TTC28Q96AY4 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TTC28Q96AY4 AC073439.1-201ENST00000624121 1774 ntBASIC16.9■□□□□ 0.3
TTC28Q96AY4 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.9■□□□□ 0.3
TTC28Q96AY4 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TTC28Q96AY4 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TTC28Q96AY4 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
TTC28Q96AY4 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.9■□□□□ 0.3
TTC28Q96AY4 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC16.9■□□□□ 0.3
TTC28Q96AY4 AC104982.3-201ENST00000581995 514 ntBASIC16.9■□□□□ 0.3
TTC28Q96AY4 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.9■□□□□ 0.3
TTC28Q96AY4 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.9■□□□□ 0.3
TTC28Q96AY4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TTC28Q96AY4 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
TTC28Q96AY4 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
TTC28Q96AY4 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC16.9■□□□□ 0.3
TTC28Q96AY4 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TTC28Q96AY4 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC16.89■□□□□ 0.3
TTC28Q96AY4 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
TTC28Q96AY4 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TTC28Q96AY4 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TTC28Q96AY4 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TTC28Q96AY4 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TTC28Q96AY4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TTC28Q96AY4 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TTC28Q96AY4 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 LINC00895-201ENST00000629028 1637 ntBASIC16.89■□□□□ 0.29
TTC28Q96AY4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TTC28Q96AY4 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TTC28Q96AY4 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TTC28Q96AY4 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 MIR4750-201ENST00000584564 56 ntBASIC16.89■□□□□ 0.29
TTC28Q96AY4 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TTC28Q96AY4 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TTC28Q96AY4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.89■□□□□ 0.29
TTC28Q96AY4 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TTC28Q96AY4 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.88■□□□□ 0.29
TTC28Q96AY4 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 RPL13AP19-201ENST00000434320 584 ntBASIC16.88■□□□□ 0.29
TTC28Q96AY4 AC069218.1-201ENST00000435269 762 ntBASIC16.88■□□□□ 0.29
TTC28Q96AY4 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.88■□□□□ 0.29
TTC28Q96AY4 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
TTC28Q96AY4 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.88■□□□□ 0.29
TTC28Q96AY4 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.88■□□□□ 0.29
TTC28Q96AY4 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 REXO1L11P-201ENST00000620964 1927 ntBASIC16.88■□□□□ 0.29
TTC28Q96AY4 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.88■□□□□ 0.29
TTC28Q96AY4 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
TTC28Q96AY4 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.88■□□□□ 0.29
TTC28Q96AY4 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.88■□□□□ 0.29
TTC28Q96AY4 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 AL020996.1-203ENST00000536896 2307 ntBASIC16.88■□□□□ 0.29
TTC28Q96AY4 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC16.88■□□□□ 0.29
TTC28Q96AY4 AL391069.4-201ENST00000609583 481 ntBASIC16.88■□□□□ 0.29
TTC28Q96AY4 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
TTC28Q96AY4 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TTC28Q96AY4 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms