Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 AL391256.1-201ENST00000443260 1855 ntBASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CCDC65Q8IXS2 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 AL031284.1-201ENST00000419297 478 ntBASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 LINC00895-201ENST00000629028 1637 ntBASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC65Q8IXS2 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 SLC25A6P2-201ENST00000497974 877 ntBASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 IGHV3-65-201ENST00000523210 341 ntBASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms