Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VRK3Q8IV63 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VRK3Q8IV63 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
VRK3Q8IV63 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VRK3Q8IV63 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.54■□□□□ 0.24
VRK3Q8IV63 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VRK3Q8IV63 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VRK3Q8IV63 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
VRK3Q8IV63 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VRK3Q8IV63 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
VRK3Q8IV63 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.54■□□□□ 0.24
VRK3Q8IV63 CRYGEP-201ENST00000412192 528 ntBASIC16.54■□□□□ 0.24
VRK3Q8IV63 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.54■□□□□ 0.24
VRK3Q8IV63 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.54■□□□□ 0.24
VRK3Q8IV63 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.54■□□□□ 0.24
VRK3Q8IV63 AC106730.1-201ENST00000566722 1090 ntBASIC16.54■□□□□ 0.24
VRK3Q8IV63 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VRK3Q8IV63 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VRK3Q8IV63 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VRK3Q8IV63 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VRK3Q8IV63 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VRK3Q8IV63 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VRK3Q8IV63 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.54■□□□□ 0.24
VRK3Q8IV63 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VRK3Q8IV63 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
VRK3Q8IV63 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
VRK3Q8IV63 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 LINC00895-201ENST00000629028 1637 ntBASIC16.53■□□□□ 0.24
VRK3Q8IV63 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
VRK3Q8IV63 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
VRK3Q8IV63 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
VRK3Q8IV63 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
VRK3Q8IV63 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
VRK3Q8IV63 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.53■□□□□ 0.24
VRK3Q8IV63 AP000347.1-202ENST00000435868 847 ntBASIC16.53■□□□□ 0.24
VRK3Q8IV63 FAM185BP-201ENST00000443595 716 ntBASIC16.53■□□□□ 0.24
VRK3Q8IV63 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.53■□□□□ 0.24
VRK3Q8IV63 KRT18P2-201ENST00000447938 1258 ntBASIC16.53■□□□□ 0.24
VRK3Q8IV63 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.53■□□□□ 0.24
VRK3Q8IV63 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
VRK3Q8IV63 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.53■□□□□ 0.24
VRK3Q8IV63 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.53■□□□□ 0.24
VRK3Q8IV63 MIR4492-201ENST00000581627 80 ntBASIC16.53■□□□□ 0.24
VRK3Q8IV63 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.53■□□□□ 0.24
VRK3Q8IV63 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.53■□□□□ 0.24
VRK3Q8IV63 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VRK3Q8IV63 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VRK3Q8IV63 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
VRK3Q8IV63 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 AC006277.1-201ENST00000624348 1610 ntBASIC16.52■□□□□ 0.24
VRK3Q8IV63 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VRK3Q8IV63 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VRK3Q8IV63 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VRK3Q8IV63 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VRK3Q8IV63 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VRK3Q8IV63 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 CXCL1P1-201ENST00000502804 216 ntBASIC16.52■□□□□ 0.24
VRK3Q8IV63 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 AC064836.3-201ENST00000607928 673 ntBASIC16.52■□□□□ 0.24
VRK3Q8IV63 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 AC010507.1-201ENST00000633895 436 ntBASIC16.52■□□□□ 0.24
VRK3Q8IV63 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.52■□□□□ 0.24
VRK3Q8IV63 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VRK3Q8IV63 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VRK3Q8IV63 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VRK3Q8IV63 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.52■□□□□ 0.23
VRK3Q8IV63 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
VRK3Q8IV63 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.52■□□□□ 0.23
VRK3Q8IV63 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VRK3Q8IV63 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VRK3Q8IV63 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VRK3Q8IV63 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VRK3Q8IV63 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.52■□□□□ 0.23
VRK3Q8IV63 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.52■□□□□ 0.23
VRK3Q8IV63 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms