Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
PEX3P56589 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PEX3P56589 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PEX3P56589 KRT19P2-202ENST00000557173 1012 ntBASIC18.64■□□□□ 0.57
PEX3P56589 MPDU1-223ENST00000582151 728 ntBASIC18.64■□□□□ 0.57
PEX3P56589 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.64■□□□□ 0.57
PEX3P56589 AC007064.4-201ENST00000637740 555 ntBASIC18.64■□□□□ 0.57
PEX3P56589 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PEX3P56589 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
PEX3P56589 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PEX3P56589 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PEX3P56589 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PEX3P56589 AL353732.1-201ENST00000569618 1459 ntBASIC18.64■□□□□ 0.57
PEX3P56589 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.64■□□□□ 0.57
PEX3P56589 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PEX3P56589 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
PEX3P56589 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
PEX3P56589 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PEX3P56589 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PEX3P56589 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PEX3P56589 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PEX3P56589 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
PEX3P56589 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.63■□□□□ 0.57
PEX3P56589 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PEX3P56589 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.63■□□□□ 0.57
PEX3P56589 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
PEX3P56589 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PEX3P56589 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.63■□□□□ 0.57
PEX3P56589 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.63■□□□□ 0.57
PEX3P56589 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
PEX3P56589 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.63■□□□□ 0.57
PEX3P56589 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.63■□□□□ 0.57
PEX3P56589 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
PEX3P56589 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PEX3P56589 AC105020.1-201ENST00000435356 2205 ntBASIC18.63■□□□□ 0.57
PEX3P56589 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
PEX3P56589 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PEX3P56589 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PEX3P56589 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PEX3P56589 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PEX3P56589 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PEX3P56589 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.63■□□□□ 0.57
PEX3P56589 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PEX3P56589 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.62■□□□□ 0.57
PEX3P56589 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.62■□□□□ 0.57
PEX3P56589 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.62■□□□□ 0.57
PEX3P56589 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
PEX3P56589 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.62■□□□□ 0.57
PEX3P56589 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.62■□□□□ 0.57
PEX3P56589 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.62■□□□□ 0.57
PEX3P56589 AC091167.2-201ENST00000579581 588 ntBASIC18.62■□□□□ 0.57
PEX3P56589 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.62■□□□□ 0.57
PEX3P56589 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
PEX3P56589 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 AC131009.4-201ENST00000624048 1740 ntBASIC18.62■□□□□ 0.57
PEX3P56589 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.62■□□□□ 0.57
PEX3P56589 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.62■□□□□ 0.57
PEX3P56589 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
PEX3P56589 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.62■□□□□ 0.57
PEX3P56589 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
PEX3P56589 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
PEX3P56589 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PEX3P56589 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.61■□□□□ 0.57
PEX3P56589 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
PEX3P56589 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.61■□□□□ 0.57
PEX3P56589 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.61■□□□□ 0.57
PEX3P56589 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
PEX3P56589 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.61■□□□□ 0.57
PEX3P56589 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.61■□□□□ 0.57
PEX3P56589 AC002347.1-201ENST00000569543 541 ntBASIC18.61■□□□□ 0.57
PEX3P56589 MIR4515-201ENST00000584082 81 ntBASIC18.61■□□□□ 0.57
PEX3P56589 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PEX3P56589 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PEX3P56589 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms