Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.62■□□□□ 0.41
EPHB3P54753 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
EPHB3P54753 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
EPHB3P54753 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.62■□□□□ 0.41
EPHB3P54753 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 FAM8A3P-201ENST00000427218 844 ntBASIC17.62■□□□□ 0.41
EPHB3P54753 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.62■□□□□ 0.41
EPHB3P54753 AL512356.2-201ENST00000546955 174 ntBASIC17.62■□□□□ 0.41
EPHB3P54753 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.62■□□□□ 0.41
EPHB3P54753 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.62■□□□□ 0.41
EPHB3P54753 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
EPHB3P54753 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.62■□□□□ 0.41
EPHB3P54753 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.62■□□□□ 0.41
EPHB3P54753 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.62■□□□□ 0.41
EPHB3P54753 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
EPHB3P54753 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
EPHB3P54753 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.62■□□□□ 0.41
EPHB3P54753 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 LINC02012-201ENST00000608206 1725 ntBASIC17.61■□□□□ 0.41
EPHB3P54753 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.61■□□□□ 0.41
EPHB3P54753 NOC2LP2-201ENST00000407594 1944 ntBASIC17.61■□□□□ 0.41
EPHB3P54753 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
EPHB3P54753 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.61■□□□□ 0.41
EPHB3P54753 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.61■□□□□ 0.41
EPHB3P54753 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.61■□□□□ 0.41
EPHB3P54753 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.61■□□□□ 0.41
EPHB3P54753 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.61■□□□□ 0.41
EPHB3P54753 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.61■□□□□ 0.41
EPHB3P54753 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.61■□□□□ 0.41
EPHB3P54753 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
EPHB3P54753 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
EPHB3P54753 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 AC021097.1-201ENST00000607902 574 ntBASIC17.61■□□□□ 0.41
EPHB3P54753 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.61■□□□□ 0.41
EPHB3P54753 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.61■□□□□ 0.41
EPHB3P54753 AC008267.7-201ENST00000624570 1194 ntBASIC17.61■□□□□ 0.41
EPHB3P54753 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.61■□□□□ 0.41
EPHB3P54753 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
EPHB3P54753 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.61■□□□□ 0.41
EPHB3P54753 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 CROCCP2-202ENST00000412962 2773 ntBASIC17.61■□□□□ 0.41
EPHB3P54753 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
EPHB3P54753 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
EPHB3P54753 AC018470.1-201ENST00000624790 3129 ntBASIC17.61■□□□□ 0.41
EPHB3P54753 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
EPHB3P54753 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.6■□□□□ 0.41
EPHB3P54753 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
EPHB3P54753 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
EPHB3P54753 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
EPHB3P54753 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
EPHB3P54753 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.6■□□□□ 0.41
EPHB3P54753 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.6■□□□□ 0.41
EPHB3P54753 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.6■□□□□ 0.41
EPHB3P54753 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.6■□□□□ 0.41
EPHB3P54753 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
EPHB3P54753 AC069262.1-201ENST00000539058 672 ntBASIC17.6■□□□□ 0.41
EPHB3P54753 AC124947.2-201ENST00000547118 1133 ntBASIC17.6■□□□□ 0.41
EPHB3P54753 SPCS2P1-201ENST00000561636 679 ntBASIC17.6■□□□□ 0.41
EPHB3P54753 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
EPHB3P54753 MIR4492-201ENST00000581627 80 ntBASIC17.6■□□□□ 0.41
EPHB3P54753 AC027307.2-201ENST00000591252 911 ntBASIC17.6■□□□□ 0.41
EPHB3P54753 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
EPHB3P54753 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.6■□□□□ 0.41
EPHB3P54753 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.6■□□□□ 0.41
EPHB3P54753 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.6■□□□□ 0.41
EPHB3P54753 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
EPHB3P54753 AC016027.1-202ENST00000607927 1699 ntBASIC17.6■□□□□ 0.41
EPHB3P54753 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
EPHB3P54753 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
EPHB3P54753 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.6■□□□□ 0.41
EPHB3P54753 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
EPHB3P54753 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms