Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CXCL12P48061 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CXCL12P48061 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CXCL12P48061 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
CXCL12P48061 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.72■□□□□ 0.27
CXCL12P48061 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.72■□□□□ 0.27
CXCL12P48061 FAM220BP-201ENST00000377689 816 ntBASIC16.72■□□□□ 0.27
CXCL12P48061 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CXCL12P48061 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.72■□□□□ 0.27
CXCL12P48061 AC104794.3-201ENST00000566840 1248 ntBASIC16.72■□□□□ 0.27
CXCL12P48061 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.72■□□□□ 0.27
CXCL12P48061 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CXCL12P48061 SPTSSB-204ENST00000617024 1292 ntBASIC16.72■□□□□ 0.27
CXCL12P48061 AL162274.1-201ENST00000617191 1098 ntBASIC16.72■□□□□ 0.27
CXCL12P48061 IGHV3-72-202ENST00000621503 303 ntBASIC16.72■□□□□ 0.27
CXCL12P48061 AC004840.1-201ENST00000636359 365 ntBASIC16.72■□□□□ 0.27
CXCL12P48061 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CXCL12P48061 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.72■□□□□ 0.27
CXCL12P48061 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CXCL12P48061 BTBD7P1-201ENST00000447253 1453 ntBASIC16.72■□□□□ 0.27
CXCL12P48061 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CXCL12P48061 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.72■□□□□ 0.27
CXCL12P48061 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CXCL12P48061 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CXCL12P48061 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.72■□□□□ 0.27
CXCL12P48061 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CXCL12P48061 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CXCL12P48061 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.71■□□□□ 0.27
CXCL12P48061 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.71■□□□□ 0.27
CXCL12P48061 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CXCL12P48061 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CXCL12P48061 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CXCL12P48061 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CXCL12P48061 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CXCL12P48061 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CXCL12P48061 FOXO1B-201ENST00000504678 1527 ntBASIC16.71■□□□□ 0.27
CXCL12P48061 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CXCL12P48061 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.71■□□□□ 0.27
CXCL12P48061 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CXCL12P48061 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CXCL12P48061 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.71■□□□□ 0.27
CXCL12P48061 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.71■□□□□ 0.27
CXCL12P48061 AL512384.1-201ENST00000406683 331 ntBASIC16.71■□□□□ 0.27
CXCL12P48061 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.71■□□□□ 0.27
CXCL12P48061 GNAQP1-201ENST00000444815 1067 ntBASIC16.71■□□□□ 0.27
CXCL12P48061 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.71■□□□□ 0.27
CXCL12P48061 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.71■□□□□ 0.27
CXCL12P48061 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.71■□□□□ 0.27
CXCL12P48061 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CXCL12P48061 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CXCL12P48061 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CXCL12P48061 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CXCL12P48061 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.71■□□□□ 0.27
CXCL12P48061 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CXCL12P48061 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.71■□□□□ 0.27
CXCL12P48061 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CXCL12P48061 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CXCL12P48061 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.27
CXCL12P48061 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CXCL12P48061 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CXCL12P48061 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
CXCL12P48061 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.7■□□□□ 0.26
CXCL12P48061 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.7■□□□□ 0.26
CXCL12P48061 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.7■□□□□ 0.26
CXCL12P48061 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
CXCL12P48061 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
CXCL12P48061 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.7■□□□□ 0.26
CXCL12P48061 RPS2P32-201ENST00000439199 892 ntBASIC16.7■□□□□ 0.26
CXCL12P48061 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.7■□□□□ 0.26
CXCL12P48061 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.7■□□□□ 0.26
CXCL12P48061 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.7■□□□□ 0.26
CXCL12P48061 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.7■□□□□ 0.26
CXCL12P48061 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.7■□□□□ 0.26
CXCL12P48061 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.7■□□□□ 0.26
CXCL12P48061 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.7■□□□□ 0.26
CXCL12P48061 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CXCL12P48061 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CXCL12P48061 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.7■□□□□ 0.26
CXCL12P48061 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.7■□□□□ 0.26
CXCL12P48061 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.7■□□□□ 0.26
CXCL12P48061 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CXCL12P48061 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.7■□□□□ 0.26
CXCL12P48061 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CXCL12P48061 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms