Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 REXO1L3P-201ENST00000622202 1288 ntBASIC17.1■□□□□ 0.33
CHRNA4P43681 AF228730.7-201ENST00000641842 219 ntBASIC17.1■□□□□ 0.33
CHRNA4P43681 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CHRNA4P43681 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CHRNA4P43681 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.1■□□□□ 0.33
CHRNA4P43681 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.1■□□□□ 0.33
CHRNA4P43681 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CHRNA4P43681 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.09■□□□□ 0.33
CHRNA4P43681 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CHRNA4P43681 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHRNA4P43681 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.09■□□□□ 0.33
CHRNA4P43681 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHRNA4P43681 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.09■□□□□ 0.33
CHRNA4P43681 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHRNA4P43681 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHRNA4P43681 AC098831.1-202ENST00000438821 336 ntBASIC17.09■□□□□ 0.33
CHRNA4P43681 AC108073.2-201ENST00000464002 357 ntBASIC17.09■□□□□ 0.33
CHRNA4P43681 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.09■□□□□ 0.33
CHRNA4P43681 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.09■□□□□ 0.33
CHRNA4P43681 AC005593.1-201ENST00000624894 515 ntBASIC17.09■□□□□ 0.33
CHRNA4P43681 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CHRNA4P43681 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CHRNA4P43681 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHRNA4P43681 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CHRNA4P43681 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHRNA4P43681 AL391256.1-201ENST00000443260 1855 ntBASIC17.09■□□□□ 0.33
CHRNA4P43681 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.09■□□□□ 0.33
CHRNA4P43681 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHRNA4P43681 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.09■□□□□ 0.33
CHRNA4P43681 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHRNA4P43681 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CHRNA4P43681 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.09■□□□□ 0.33
CHRNA4P43681 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CHRNA4P43681 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.09■□□□□ 0.33
CHRNA4P43681 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHRNA4P43681 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CHRNA4P43681 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CHRNA4P43681 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
CHRNA4P43681 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHRNA4P43681 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CHRNA4P43681 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
CHRNA4P43681 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CHRNA4P43681 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CHRNA4P43681 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CHRNA4P43681 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.08■□□□□ 0.33
CHRNA4P43681 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.08■□□□□ 0.33
CHRNA4P43681 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CHRNA4P43681 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.08■□□□□ 0.32
CHRNA4P43681 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.08■□□□□ 0.32
CHRNA4P43681 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CHRNA4P43681 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHRNA4P43681 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHRNA4P43681 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHRNA4P43681 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CHRNA4P43681 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.32
CHRNA4P43681 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.08■□□□□ 0.32
CHRNA4P43681 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.08■□□□□ 0.32
CHRNA4P43681 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CHRNA4P43681 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CHRNA4P43681 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.08■□□□□ 0.32
CHRNA4P43681 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.08■□□□□ 0.32
CHRNA4P43681 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.08■□□□□ 0.32
CHRNA4P43681 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CHRNA4P43681 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.08■□□□□ 0.32
CHRNA4P43681 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
CHRNA4P43681 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.08■□□□□ 0.32
CHRNA4P43681 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.08■□□□□ 0.32
CHRNA4P43681 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CHRNA4P43681 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
CHRNA4P43681 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
CHRNA4P43681 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CHRNA4P43681 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHRNA4P43681 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHRNA4P43681 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHRNA4P43681 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHRNA4P43681 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.08■□□□□ 0.32
CHRNA4P43681 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
CHRNA4P43681 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.08■□□□□ 0.32
CHRNA4P43681 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CHRNA4P43681 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.08■□□□□ 0.32
CHRNA4P43681 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.07■□□□□ 0.32
CHRNA4P43681 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.07■□□□□ 0.32
CHRNA4P43681 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
CHRNA4P43681 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CHRNA4P43681 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.07■□□□□ 0.32
CHRNA4P43681 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.07■□□□□ 0.32
CHRNA4P43681 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.07■□□□□ 0.32
CHRNA4P43681 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.07■□□□□ 0.32
CHRNA4P43681 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms