Protein–RNA interactions for Protein: P35523

CLCN1, Chloride channel protein 1, humanhuman

Predictions only

Length 988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1P35523 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC19.32■□□□□ 0.68
CLCN1P35523 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.32■□□□□ 0.68
CLCN1P35523 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.32■□□□□ 0.68
CLCN1P35523 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLCN1P35523 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.32■□□□□ 0.68
CLCN1P35523 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CLCN1P35523 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
CLCN1P35523 RNF152P1-201ENST00000397754 604 ntBASIC19.32■□□□□ 0.68
CLCN1P35523 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLCN1P35523 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.32■□□□□ 0.68
CLCN1P35523 AC024563.2-201ENST00000603282 481 ntBASIC19.32■□□□□ 0.68
CLCN1P35523 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CLCN1P35523 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC19.32■□□□□ 0.68
CLCN1P35523 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLCN1P35523 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLCN1P35523 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLCN1P35523 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CLCN1P35523 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLCN1P35523 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLCN1P35523 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLCN1P35523 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLCN1P35523 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLCN1P35523 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CLCN1P35523 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC19.32■□□□□ 0.68
CLCN1P35523 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLCN1P35523 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.32■□□□□ 0.68
CLCN1P35523 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLCN1P35523 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CLCN1P35523 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.31■□□□□ 0.68
CLCN1P35523 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CLCN1P35523 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.31■□□□□ 0.68
CLCN1P35523 KRT89P-201ENST00000620027 1478 ntBASIC19.31■□□□□ 0.68
CLCN1P35523 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC19.31■□□□□ 0.68
CLCN1P35523 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 RCN1P1-201ENST00000400413 996 ntBASIC19.31■□□□□ 0.68
CLCN1P35523 AK4P3-201ENST00000418260 669 ntBASIC19.31■□□□□ 0.68
CLCN1P35523 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.31■□□□□ 0.68
CLCN1P35523 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.31■□□□□ 0.68
CLCN1P35523 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
CLCN1P35523 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.31■□□□□ 0.68
CLCN1P35523 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.31■□□□□ 0.68
CLCN1P35523 AC008687.5-201ENST00000593746 558 ntBASIC19.31■□□□□ 0.68
CLCN1P35523 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.31■□□□□ 0.68
CLCN1P35523 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CLCN1P35523 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLCN1P35523 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CLCN1P35523 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC19.3■□□□□ 0.68
CLCN1P35523 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLCN1P35523 FER1L4-210ENST00000615531 5998 ntBASIC19.3■□□□□ 0.68
CLCN1P35523 F11R-206ENST00000621309 4770 ntTSL 5 BASIC19.3■□□□□ 0.68
CLCN1P35523 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLCN1P35523 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLCN1P35523 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
CLCN1P35523 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.3■□□□□ 0.68
CLCN1P35523 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLCN1P35523 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLCN1P35523 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.3■□□□□ 0.68
CLCN1P35523 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC19.3■□□□□ 0.68
CLCN1P35523 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLCN1P35523 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.3■□□□□ 0.68
CLCN1P35523 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.3■□□□□ 0.68
CLCN1P35523 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLCN1P35523 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.3■□□□□ 0.68
CLCN1P35523 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.3■□□□□ 0.68
CLCN1P35523 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.3■□□□□ 0.68
CLCN1P35523 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CLCN1P35523 HYMAI.1-201ENST00000620949 238 ntBASIC19.3■□□□□ 0.68
CLCN1P35523 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.3■□□□□ 0.68
CLCN1P35523 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLCN1P35523 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLCN1P35523 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CLCN1P35523 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC19.3■□□□□ 0.68
CLCN1P35523 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC19.3■□□□□ 0.68
CLCN1P35523 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.3■□□□□ 0.68
CLCN1P35523 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLCN1P35523 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLCN1P35523 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLCN1P35523 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC19.29■□□□□ 0.68
CLCN1P35523 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CLCN1P35523 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLCN1P35523 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CLCN1P35523 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLCN1P35523 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CLCN1P35523 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC19.29■□□□□ 0.68
CLCN1P35523 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLCN1P35523 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.29■□□□□ 0.68
CLCN1P35523 CICP14-201ENST00000629111 2732 ntBASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms