Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
SDC1P18827 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDC1P18827 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SDC1P18827 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SDC1P18827 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.14■□□□□ 0.17
SDC1P18827 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.14■□□□□ 0.17
SDC1P18827 HCG4P8-203ENST00000443049 980 ntBASIC16.14■□□□□ 0.17
SDC1P18827 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.14■□□□□ 0.17
SDC1P18827 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SDC1P18827 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
SDC1P18827 KRT18P31-201ENST00000506277 1292 ntBASIC16.14■□□□□ 0.17
SDC1P18827 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.14■□□□□ 0.17
SDC1P18827 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.14■□□□□ 0.17
SDC1P18827 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.14■□□□□ 0.17
SDC1P18827 MIR3652-201ENST00000579335 131 ntBASIC16.14■□□□□ 0.17
SDC1P18827 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.14■□□□□ 0.17
SDC1P18827 AC013467.2-201ENST00000605472 835 ntBASIC16.14■□□□□ 0.17
SDC1P18827 AL355877.3-201ENST00000622820 899 ntBASIC16.14■□□□□ 0.17
SDC1P18827 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.14■□□□□ 0.17
SDC1P18827 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDC1P18827 AC006277.1-201ENST00000624348 1610 ntBASIC16.14■□□□□ 0.17
SDC1P18827 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SDC1P18827 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SDC1P18827 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SDC1P18827 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDC1P18827 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SDC1P18827 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SDC1P18827 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SDC1P18827 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SDC1P18827 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.14■□□□□ 0.17
SDC1P18827 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDC1P18827 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.14■□□□□ 0.17
SDC1P18827 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.14■□□□□ 0.17
SDC1P18827 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.13■□□□□ 0.17
SDC1P18827 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.13■□□□□ 0.17
SDC1P18827 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDC1P18827 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.13■□□□□ 0.17
SDC1P18827 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.13■□□□□ 0.17
SDC1P18827 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDC1P18827 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SDC1P18827 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.13■□□□□ 0.17
SDC1P18827 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
SDC1P18827 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDC1P18827 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDC1P18827 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDC1P18827 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDC1P18827 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDC1P18827 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.13■□□□□ 0.17
SDC1P18827 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.13■□□□□ 0.17
SDC1P18827 FGFR3P6-201ENST00000457012 610 ntBASIC16.13■□□□□ 0.17
SDC1P18827 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDC1P18827 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SDC1P18827 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
SDC1P18827 SART3-203ENST00000546611 1184 ntBASIC16.13■□□□□ 0.17
SDC1P18827 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.13■□□□□ 0.17
SDC1P18827 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
SDC1P18827 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.13■□□□□ 0.17
SDC1P18827 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.13■□□□□ 0.17
SDC1P18827 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.13■□□□□ 0.17
SDC1P18827 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.13■□□□□ 0.17
SDC1P18827 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SDC1P18827 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.13■□□□□ 0.17
SDC1P18827 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDC1P18827 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDC1P18827 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
SDC1P18827 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SDC1P18827 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.13■□□□□ 0.17
SDC1P18827 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
SDC1P18827 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SDC1P18827 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.13■□□□□ 0.17
SDC1P18827 AC026691.1-201ENST00000602502 2017 ntBASIC16.12■□□□□ 0.17
SDC1P18827 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.12■□□□□ 0.17
SDC1P18827 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SDC1P18827 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SDC1P18827 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SDC1P18827 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.12■□□□□ 0.17
SDC1P18827 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDC1P18827 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.12■□□□□ 0.17
SDC1P18827 PAWRP1-201ENST00000451083 565 ntBASIC16.12■□□□□ 0.17
SDC1P18827 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.12■□□□□ 0.17
SDC1P18827 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.12■□□□□ 0.17
SDC1P18827 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.12■□□□□ 0.17
SDC1P18827 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms