Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.57■□□□□ 0.24
PCNAP12004 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
PCNAP12004 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.57■□□□□ 0.24
PCNAP12004 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.57■□□□□ 0.24
PCNAP12004 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.57■□□□□ 0.24
PCNAP12004 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.57■□□□□ 0.24
PCNAP12004 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.57■□□□□ 0.24
PCNAP12004 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.57■□□□□ 0.24
PCNAP12004 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.57■□□□□ 0.24
PCNAP12004 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.57■□□□□ 0.24
PCNAP12004 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.57■□□□□ 0.24
PCNAP12004 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PCNAP12004 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.57■□□□□ 0.24
PCNAP12004 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.57■□□□□ 0.24
PCNAP12004 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 AC005915.1-201ENST00000624912 2018 ntBASIC16.57■□□□□ 0.24
PCNAP12004 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
PCNAP12004 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.57■□□□□ 0.24
PCNAP12004 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
PCNAP12004 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
PCNAP12004 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 SIGLEC16-201ENST00000599858 1437 ntBASIC16.56■□□□□ 0.24
PCNAP12004 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
PCNAP12004 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.56■□□□□ 0.24
PCNAP12004 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.56■□□□□ 0.24
PCNAP12004 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.56■□□□□ 0.24
PCNAP12004 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.56■□□□□ 0.24
PCNAP12004 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PCNAP12004 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.56■□□□□ 0.24
PCNAP12004 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
PCNAP12004 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.56■□□□□ 0.24
PCNAP12004 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.56■□□□□ 0.24
PCNAP12004 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.56■□□□□ 0.24
PCNAP12004 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 MTDHP3-201ENST00000594186 672 ntBASIC16.56■□□□□ 0.24
PCNAP12004 LINC01711-201ENST00000598340 967 ntBASIC16.56■□□□□ 0.24
PCNAP12004 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.56■□□□□ 0.24
PCNAP12004 AC092068.3-201ENST00000587894 2016 ntBASIC16.56■□□□□ 0.24
PCNAP12004 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PCNAP12004 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
PCNAP12004 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCNAP12004 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
PCNAP12004 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PCNAP12004 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
PCNAP12004 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.55■□□□□ 0.24
PCNAP12004 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
PCNAP12004 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCNAP12004 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.55■□□□□ 0.24
PCNAP12004 GPR89P-201ENST00000407924 1495 ntBASIC16.55■□□□□ 0.24
PCNAP12004 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.55■□□□□ 0.24
PCNAP12004 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.55■□□□□ 0.24
PCNAP12004 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCNAP12004 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCNAP12004 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCNAP12004 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCNAP12004 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PCNAP12004 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCNAP12004 TSPY19P-201ENST00000418461 509 ntBASIC16.55■□□□□ 0.24
PCNAP12004 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.55■□□□□ 0.24
PCNAP12004 TSPY18P-201ENST00000441642 509 ntBASIC16.55■□□□□ 0.24
PCNAP12004 AC106795.1-205ENST00000512851 1056 ntBASIC16.55■□□□□ 0.24
PCNAP12004 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PCNAP12004 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.55■□□□□ 0.24
PCNAP12004 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms