Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 AL645728.1-201ENST00000366221 2101 ntBASIC12.44□□□□□ -0.42
SMKR1H3BMG3 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 Telomerase-vert.1-201ENST00000363312 438 ntBASIC12.44□□□□□ -0.42
SMKR1H3BMG3 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 GXYLT1P6-201ENST00000456472 1187 ntBASIC12.44□□□□□ -0.42
SMKR1H3BMG3 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 AC007326.2-201ENST00000624224 7579 ntBASIC12.44□□□□□ -0.42
SMKR1H3BMG3 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
SMKR1H3BMG3 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 ABHD17AP1-201ENST00000358206 933 ntBASIC12.43□□□□□ -0.42
SMKR1H3BMG3 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 RPS2P55-201ENST00000397318 883 ntBASIC12.43□□□□□ -0.42
SMKR1H3BMG3 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 REXO2-216ENST00000544196 452 ntTSL 3 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 AC026471.5-201ENST00000615068 467 ntBASIC12.43□□□□□ -0.42
SMKR1H3BMG3 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SMKR1H3BMG3 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms