Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC19.39■□□□□ 0.69
FOXA2Q9Y261 AL359504.2-201ENST00000605506 1601 ntBASIC19.39■□□□□ 0.69
FOXA2Q9Y261 AC096887.2-201ENST00000623443 1957 ntBASIC19.39■□□□□ 0.69
FOXA2Q9Y261 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
FOXA2Q9Y261 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
FOXA2Q9Y261 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
FOXA2Q9Y261 HES4-202ENST00000428771 1040 ntTSL 2 BASIC19.38■□□□□ 0.69
FOXA2Q9Y261 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.38■□□□□ 0.69
FOXA2Q9Y261 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
FOXA2Q9Y261 AC093323.1-202ENST00000635031 2045 ntBASIC19.38■□□□□ 0.69
FOXA2Q9Y261 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
FOXA2Q9Y261 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA2Q9Y261 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA2Q9Y261 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA2Q9Y261 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA2Q9Y261 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA2Q9Y261 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC19.37■□□□□ 0.69
FOXA2Q9Y261 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC19.37■□□□□ 0.69
FOXA2Q9Y261 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
FOXA2Q9Y261 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
FOXA2Q9Y261 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.36■□□□□ 0.69
FOXA2Q9Y261 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
FOXA2Q9Y261 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
FOXA2Q9Y261 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC19.36■□□□□ 0.69
FOXA2Q9Y261 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA2Q9Y261 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA2Q9Y261 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.35■□□□□ 0.69
FOXA2Q9Y261 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA2Q9Y261 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA2Q9Y261 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
FOXA2Q9Y261 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA2Q9Y261 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
FOXA2Q9Y261 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA2Q9Y261 PKM-204ENST00000449901 2526 ntTSL 2 BASIC19.34■□□□□ 0.69
FOXA2Q9Y261 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA2Q9Y261 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC19.34■□□□□ 0.69
FOXA2Q9Y261 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA2Q9Y261 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.34■□□□□ 0.69
FOXA2Q9Y261 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
FOXA2Q9Y261 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC19.34■□□□□ 0.69
FOXA2Q9Y261 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA2Q9Y261 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
FOXA2Q9Y261 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.33■□□□□ 0.69
FOXA2Q9Y261 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
FOXA2Q9Y261 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
FOXA2Q9Y261 AC092296.2-201ENST00000589470 999 ntBASIC19.33■□□□□ 0.68
FOXA2Q9Y261 HSD17B1P1-201ENST00000590052 955 ntBASIC19.33■□□□□ 0.68
FOXA2Q9Y261 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA2Q9Y261 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.33■□□□□ 0.68
FOXA2Q9Y261 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA2Q9Y261 AC022211.4-201ENST00000625094 2161 ntBASIC19.33■□□□□ 0.68
FOXA2Q9Y261 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA2Q9Y261 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA2Q9Y261 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA2Q9Y261 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA2Q9Y261 AL157400.5-201ENST00000507624 621 ntBASIC19.32■□□□□ 0.68
FOXA2Q9Y261 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA2Q9Y261 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA2Q9Y261 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA2Q9Y261 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
FOXA2Q9Y261 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA2Q9Y261 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA2Q9Y261 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA2Q9Y261 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA2Q9Y261 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA2Q9Y261 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA2Q9Y261 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA2Q9Y261 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA2Q9Y261 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA2Q9Y261 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
FOXA2Q9Y261 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
FOXA2Q9Y261 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.3■□□□□ 0.68
FOXA2Q9Y261 ECEL1P2-201ENST00000461596 1295 ntBASIC19.3■□□□□ 0.68
FOXA2Q9Y261 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC19.3■□□□□ 0.68
FOXA2Q9Y261 MOB2-207ENST00000614710 705 ntTSL 5 BASIC19.3■□□□□ 0.68
FOXA2Q9Y261 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
FOXA2Q9Y261 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
FOXA2Q9Y261 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
FOXA2Q9Y261 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA2Q9Y261 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA2Q9Y261 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA2Q9Y261 RNF126P1-201ENST00000567452 1320 ntBASIC19.29■□□□□ 0.68
FOXA2Q9Y261 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA2Q9Y261 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA2Q9Y261 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA2Q9Y261 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
FOXA2Q9Y261 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA2Q9Y261 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA2Q9Y261 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC19.28■□□□□ 0.68
FOXA2Q9Y261 REST-210ENST00000638187 1334 ntTSL 5 BASIC19.28■□□□□ 0.68
FOXA2Q9Y261 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.28■□□□□ 0.68
FOXA2Q9Y261 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA2Q9Y261 AC138932.3-201ENST00000567634 1902 ntBASIC19.28■□□□□ 0.68
FOXA2Q9Y261 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.28■□□□□ 0.68
FOXA2Q9Y261 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC19.28■□□□□ 0.68
FOXA2Q9Y261 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA2Q9Y261 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA2Q9Y261 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.27■□□□□ 0.68
FOXA2Q9Y261 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC19.26■□□□□ 0.67
FOXA2Q9Y261 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms