Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC37.34■■■■□ 3.57
COL17A1Q9UMD9 SUDS3P1-201ENST00000505831 966 ntBASIC37.34■■■■□ 3.57
COL17A1Q9UMD9 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC37.34■■■■□ 3.57
COL17A1Q9UMD9 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC37.34■■■■□ 3.57
COL17A1Q9UMD9 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC37.33■■■■□ 3.57
COL17A1Q9UMD9 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC37.33■■■■□ 3.57
COL17A1Q9UMD9 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC37.32■■■■□ 3.56
COL17A1Q9UMD9 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC37.32■■■■□ 3.56
COL17A1Q9UMD9 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC37.32■■■■□ 3.56
COL17A1Q9UMD9 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC37.31■■■■□ 3.56
COL17A1Q9UMD9 AC142381.2-201ENST00000566120 298 ntBASIC37.31■■■■□ 3.56
COL17A1Q9UMD9 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC37.31■■■■□ 3.56
COL17A1Q9UMD9 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC37.3■■■■□ 3.56
COL17A1Q9UMD9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC37.3■■■■□ 3.56
COL17A1Q9UMD9 AC010997.5-201ENST00000609182 354 ntBASIC37.3■■■■□ 3.56
COL17A1Q9UMD9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC37.3■■■■□ 3.56
COL17A1Q9UMD9 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC37.29■■■■□ 3.56
COL17A1Q9UMD9 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC37.29■■■■□ 3.56
COL17A1Q9UMD9 ANKRD20A6P-201ENST00000618763 204 ntBASIC37.29■■■■□ 3.56
COL17A1Q9UMD9 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC37.27■■■■□ 3.56
COL17A1Q9UMD9 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC37.27■■■■□ 3.56
COL17A1Q9UMD9 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC37.26■■■■□ 3.56
COL17A1Q9UMD9 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC37.26■■■■□ 3.56
COL17A1Q9UMD9 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC37.26■■■■□ 3.56
COL17A1Q9UMD9 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC37.26■■■■□ 3.56
COL17A1Q9UMD9 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC37.26■■■■□ 3.56
COL17A1Q9UMD9 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC37.26■■■■□ 3.55
COL17A1Q9UMD9 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC37.25■■■■□ 3.55
COL17A1Q9UMD9 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC37.24■■■■□ 3.55
COL17A1Q9UMD9 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC37.23■■■■□ 3.55
COL17A1Q9UMD9 AL356740.2-201ENST00000601559 647 ntBASIC37.22■■■■□ 3.55
COL17A1Q9UMD9 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC37.22■■■■□ 3.55
COL17A1Q9UMD9 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC37.21■■■■□ 3.55
COL17A1Q9UMD9 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC37.21■■■■□ 3.55
COL17A1Q9UMD9 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC37.21■■■■□ 3.55
COL17A1Q9UMD9 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC37.21■■■■□ 3.55
COL17A1Q9UMD9 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC37.21■■■■□ 3.55
COL17A1Q9UMD9 PBX2P1-201ENST00000493219 1291 ntBASIC37.2■■■■□ 3.55
COL17A1Q9UMD9 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC37.2■■■■□ 3.55
COL17A1Q9UMD9 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC37.2■■■■□ 3.54
COL17A1Q9UMD9 SENP5-202ENST00000419026 973 ntTSL 3 BASIC37.2■■■■□ 3.54
COL17A1Q9UMD9 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC37.19■■■■□ 3.54
COL17A1Q9UMD9 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC37.19■■■■□ 3.54
COL17A1Q9UMD9 MIR4281-201ENST00000580852 62 ntBASIC37.19■■■■□ 3.54
COL17A1Q9UMD9 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC37.18■■■■□ 3.54
COL17A1Q9UMD9 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC37.18■■■■□ 3.54
COL17A1Q9UMD9 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC37.18■■■■□ 3.54
COL17A1Q9UMD9 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC37.18■■■■□ 3.54
COL17A1Q9UMD9 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC37.18■■■■□ 3.54
COL17A1Q9UMD9 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC37.18■■■■□ 3.54
COL17A1Q9UMD9 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC37.17■■■■□ 3.54
COL17A1Q9UMD9 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC37.17■■■■□ 3.54
COL17A1Q9UMD9 PARL-206ENST00000435888 1098 ntTSL 5 BASIC37.17■■■■□ 3.54
COL17A1Q9UMD9 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC37.17■■■■□ 3.54
COL17A1Q9UMD9 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC37.17■■■■□ 3.54
COL17A1Q9UMD9 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC37.17■■■■□ 3.54
COL17A1Q9UMD9 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC37.17■■■■□ 3.54
COL17A1Q9UMD9 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC37.17■■■■□ 3.54
COL17A1Q9UMD9 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC37.15■■■■□ 3.54
COL17A1Q9UMD9 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC37.14■■■■□ 3.54
COL17A1Q9UMD9 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC37.13■■■■□ 3.54
COL17A1Q9UMD9 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC37.13■■■■□ 3.54
COL17A1Q9UMD9 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC37.13■■■■□ 3.53
COL17A1Q9UMD9 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC37.13■■■■□ 3.53
COL17A1Q9UMD9 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC37.13■■■■□ 3.53
COL17A1Q9UMD9 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC37.13■■■■□ 3.53
COL17A1Q9UMD9 MTDHP2-201ENST00000601468 714 ntBASIC37.13■■■■□ 3.53
COL17A1Q9UMD9 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC37.13■■■■□ 3.53
COL17A1Q9UMD9 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC37.12■■■■□ 3.53
COL17A1Q9UMD9 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC37.12■■■■□ 3.53
COL17A1Q9UMD9 MIR6821-201ENST00000617625 74 ntBASIC37.12■■■■□ 3.53
COL17A1Q9UMD9 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC37.12■■■■□ 3.53
COL17A1Q9UMD9 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC37.11■■■■□ 3.53
COL17A1Q9UMD9 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC37.11■■■■□ 3.53
COL17A1Q9UMD9 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC37.11■■■■□ 3.53
COL17A1Q9UMD9 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC37.11■■■■□ 3.53
COL17A1Q9UMD9 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC37.11■■■■□ 3.53
COL17A1Q9UMD9 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC37.11■■■■□ 3.53
COL17A1Q9UMD9 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC37.09■■■■□ 3.53
COL17A1Q9UMD9 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC37.09■■■■□ 3.53
COL17A1Q9UMD9 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC37.09■■■■□ 3.53
COL17A1Q9UMD9 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC37.09■■■■□ 3.53
COL17A1Q9UMD9 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC37.09■■■■□ 3.53
COL17A1Q9UMD9 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC37.09■■■■□ 3.53
COL17A1Q9UMD9 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC37.08■■■■□ 3.53
COL17A1Q9UMD9 EXOG-217ENST00000630638 197 ntTSL 5 BASIC37.08■■■■□ 3.53
COL17A1Q9UMD9 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC37.08■■■■□ 3.53
COL17A1Q9UMD9 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC37.07■■■■□ 3.53
COL17A1Q9UMD9 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC37.07■■■■□ 3.53
COL17A1Q9UMD9 AL162430.1-201ENST00000480705 870 ntBASIC37.07■■■■□ 3.52
COL17A1Q9UMD9 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC37.06■■■■□ 3.52
COL17A1Q9UMD9 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC37.06■■■■□ 3.52
COL17A1Q9UMD9 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC37.06■■■■□ 3.52
COL17A1Q9UMD9 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC37.05■■■■□ 3.52
COL17A1Q9UMD9 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC37.05■■■■□ 3.52
COL17A1Q9UMD9 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC37.05■■■■□ 3.52
COL17A1Q9UMD9 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC37.05■■■■□ 3.52
COL17A1Q9UMD9 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC37.05■■■■□ 3.52
COL17A1Q9UMD9 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC37.04■■■■□ 3.52
COL17A1Q9UMD9 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC37.04■■■■□ 3.52
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms