Protein–RNA interactions for Protein: Q9NP99

TREM1, Triggering receptor expressed on myeloid cells 1, humanhuman

Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREM1Q9NP99 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TREM1Q9NP99 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TREM1Q9NP99 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TREM1Q9NP99 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC19.46■□□□□ 0.71
TREM1Q9NP99 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.46■□□□□ 0.71
TREM1Q9NP99 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TREM1Q9NP99 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TREM1Q9NP99 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TREM1Q9NP99 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TREM1Q9NP99 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TREM1Q9NP99 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.45■□□□□ 0.7
TREM1Q9NP99 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
TREM1Q9NP99 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.45■□□□□ 0.7
TREM1Q9NP99 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TREM1Q9NP99 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TREM1Q9NP99 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TREM1Q9NP99 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC19.44■□□□□ 0.7
TREM1Q9NP99 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TREM1Q9NP99 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TREM1Q9NP99 AC018358.1-201ENST00000631079 1402 ntBASIC19.43■□□□□ 0.7
TREM1Q9NP99 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
TREM1Q9NP99 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TREM1Q9NP99 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC19.43■□□□□ 0.7
TREM1Q9NP99 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.43■□□□□ 0.7
TREM1Q9NP99 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TREM1Q9NP99 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
TREM1Q9NP99 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TREM1Q9NP99 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TREM1Q9NP99 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TREM1Q9NP99 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.42■□□□□ 0.7
TREM1Q9NP99 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TREM1Q9NP99 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC19.42■□□□□ 0.7
TREM1Q9NP99 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TREM1Q9NP99 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TREM1Q9NP99 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TREM1Q9NP99 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.41■□□□□ 0.7
TREM1Q9NP99 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TREM1Q9NP99 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC19.41■□□□□ 0.7
TREM1Q9NP99 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.4■□□□□ 0.7
TREM1Q9NP99 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TREM1Q9NP99 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TREM1Q9NP99 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.4■□□□□ 0.7
TREM1Q9NP99 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TREM1Q9NP99 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TREM1Q9NP99 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TREM1Q9NP99 AC097639.1-201ENST00000565519 1891 ntBASIC19.39■□□□□ 0.7
TREM1Q9NP99 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
TREM1Q9NP99 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
TREM1Q9NP99 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TREM1Q9NP99 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TREM1Q9NP99 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TREM1Q9NP99 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TREM1Q9NP99 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TREM1Q9NP99 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.39■□□□□ 0.69
TREM1Q9NP99 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TREM1Q9NP99 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TREM1Q9NP99 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TREM1Q9NP99 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TREM1Q9NP99 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TREM1Q9NP99 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TREM1Q9NP99 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TREM1Q9NP99 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
TREM1Q9NP99 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TREM1Q9NP99 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TREM1Q9NP99 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.37■□□□□ 0.69
TREM1Q9NP99 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TREM1Q9NP99 WHAMMP3-201ENST00000611636 1609 ntBASIC19.37■□□□□ 0.69
TREM1Q9NP99 AC127502.1-201ENST00000399971 1502 ntBASIC19.37■□□□□ 0.69
TREM1Q9NP99 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TREM1Q9NP99 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TREM1Q9NP99 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TREM1Q9NP99 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
TREM1Q9NP99 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
TREM1Q9NP99 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TREM1Q9NP99 DUSP8P5-201ENST00000422884 1815 ntBASIC19.36■□□□□ 0.69
TREM1Q9NP99 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
TREM1Q9NP99 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
TREM1Q9NP99 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
TREM1Q9NP99 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TREM1Q9NP99 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
TREM1Q9NP99 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TREM1Q9NP99 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TREM1Q9NP99 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TREM1Q9NP99 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.35■□□□□ 0.69
TREM1Q9NP99 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.35■□□□□ 0.69
TREM1Q9NP99 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TREM1Q9NP99 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TREM1Q9NP99 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.35■□□□□ 0.69
TREM1Q9NP99 LINC01124-201ENST00000409786 2117 ntBASIC19.34■□□□□ 0.69
TREM1Q9NP99 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
TREM1Q9NP99 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TREM1Q9NP99 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TREM1Q9NP99 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TREM1Q9NP99 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TREM1Q9NP99 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TREM1Q9NP99 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TREM1Q9NP99 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TREM1Q9NP99 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TREM1Q9NP99 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.33■□□□□ 0.68
TREM1Q9NP99 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms