Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.02■■□□□ 1.28
BRF2Q9HAW0 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.02■■□□□ 1.28
BRF2Q9HAW0 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
BRF2Q9HAW0 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
BRF2Q9HAW0 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.02■■□□□ 1.28
BRF2Q9HAW0 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
BRF2Q9HAW0 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
BRF2Q9HAW0 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
BRF2Q9HAW0 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
BRF2Q9HAW0 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
BRF2Q9HAW0 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
BRF2Q9HAW0 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC23.01■■□□□ 1.27
BRF2Q9HAW0 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
BRF2Q9HAW0 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC23■■□□□ 1.27
BRF2Q9HAW0 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
BRF2Q9HAW0 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
BRF2Q9HAW0 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
BRF2Q9HAW0 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
BRF2Q9HAW0 RP9P-202ENST00000450133 1212 ntBASIC23■■□□□ 1.27
BRF2Q9HAW0 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC23■■□□□ 1.27
BRF2Q9HAW0 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23■■□□□ 1.27
BRF2Q9HAW0 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
BRF2Q9HAW0 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23■■□□□ 1.27
BRF2Q9HAW0 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23■■□□□ 1.27
BRF2Q9HAW0 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
BRF2Q9HAW0 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
BRF2Q9HAW0 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC22.99■■□□□ 1.27
BRF2Q9HAW0 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC22.99■■□□□ 1.27
BRF2Q9HAW0 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
BRF2Q9HAW0 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
BRF2Q9HAW0 AC097639.1-201ENST00000565519 1891 ntBASIC22.98■■□□□ 1.27
BRF2Q9HAW0 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
BRF2Q9HAW0 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
BRF2Q9HAW0 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
BRF2Q9HAW0 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
BRF2Q9HAW0 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC22.97■■□□□ 1.27
BRF2Q9HAW0 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
BRF2Q9HAW0 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC22.97■■□□□ 1.27
BRF2Q9HAW0 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC22.97■■□□□ 1.27
BRF2Q9HAW0 GPX1-201ENST00000419349 1106 ntBASIC22.97■■□□□ 1.27
BRF2Q9HAW0 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
BRF2Q9HAW0 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC22.96■■□□□ 1.27
BRF2Q9HAW0 AC007029.1-201ENST00000604183 313 ntBASIC22.96■■□□□ 1.27
BRF2Q9HAW0 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
BRF2Q9HAW0 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC22.96■■□□□ 1.27
BRF2Q9HAW0 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
BRF2Q9HAW0 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.96■■□□□ 1.27
BRF2Q9HAW0 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.96■■□□□ 1.27
BRF2Q9HAW0 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
BRF2Q9HAW0 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.96■■□□□ 1.27
BRF2Q9HAW0 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC22.95■■□□□ 1.27
BRF2Q9HAW0 AC142381.3-201ENST00000568208 1670 ntBASIC22.95■■□□□ 1.26
BRF2Q9HAW0 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC22.95■■□□□ 1.26
BRF2Q9HAW0 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
BRF2Q9HAW0 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC22.95■■□□□ 1.26
BRF2Q9HAW0 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
BRF2Q9HAW0 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
BRF2Q9HAW0 AC093536.1-201ENST00000569153 554 ntBASIC22.94■■□□□ 1.26
BRF2Q9HAW0 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
BRF2Q9HAW0 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
BRF2Q9HAW0 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
BRF2Q9HAW0 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
BRF2Q9HAW0 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
BRF2Q9HAW0 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
BRF2Q9HAW0 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
BRF2Q9HAW0 GFER-205ENST00000569451 517 ntTSL 5 BASIC22.93■■□□□ 1.26
BRF2Q9HAW0 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
BRF2Q9HAW0 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
BRF2Q9HAW0 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
BRF2Q9HAW0 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
BRF2Q9HAW0 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC22.92■■□□□ 1.26
BRF2Q9HAW0 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
BRF2Q9HAW0 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC22.92■■□□□ 1.26
BRF2Q9HAW0 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
BRF2Q9HAW0 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
BRF2Q9HAW0 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
BRF2Q9HAW0 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
BRF2Q9HAW0 AC022211.4-201ENST00000625094 2161 ntBASIC22.91■■□□□ 1.26
BRF2Q9HAW0 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
BRF2Q9HAW0 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
BRF2Q9HAW0 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC22.91■■□□□ 1.26
BRF2Q9HAW0 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
BRF2Q9HAW0 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
BRF2Q9HAW0 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC22.91■■□□□ 1.26
BRF2Q9HAW0 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC22.91■■□□□ 1.26
BRF2Q9HAW0 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
BRF2Q9HAW0 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC22.91■■□□□ 1.26
BRF2Q9HAW0 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC22.91■■□□□ 1.26
BRF2Q9HAW0 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
BRF2Q9HAW0 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
BRF2Q9HAW0 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
BRF2Q9HAW0 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
BRF2Q9HAW0 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
BRF2Q9HAW0 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
BRF2Q9HAW0 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.26
BRF2Q9HAW0 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
BRF2Q9HAW0 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC22.89■■□□□ 1.26
BRF2Q9HAW0 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.26
BRF2Q9HAW0 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
BRF2Q9HAW0 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC22.88■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms